| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,482,099 | C→T | D62D (GAC→GAT) | unknown → | Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,482,099 | 0 | C | T | 100.0% | 212.8 / NA | 78 | D62D (GAC→GAT) | unknown | Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (43/35); total (43/35) | |||||||||||
TCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCTCGCACTATTACTATAGTGTCAAGCCGTGATGATATCCAAGGTGAAGTTGCACAAATTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTCACCTCATCTGATGAAATTTCATTTTCAGCAGAAGACACTGTAGGGGTTATTATTGATATCACACATGAGACTAACATAAAGACTATTGTCGAACGAGTTTTTAGTATAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCCATCTCTTTATCACAAAAACTACTAGATGAGGGCATCCTTTACTTTAATTCGCATACTCAGTTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGCTGATATCCCTCGCTTAAGAGATACTGTTAAAAT > 1/1481854‑1482344 | tcttGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGt < 1:527924/251‑1 (MQ=255) cttGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTa > 1:799743/1‑251 (MQ=255) cTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAggga < 1:250263/247‑2 (MQ=255) cTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGAttat > 1:168698/1‑251 (MQ=255) tAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGAttatta < 1:569616/251‑1 (MQ=255) aaaaGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat < 1:272975/251‑1 (MQ=255) gtgtTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACAt > 1:486786/1‑251 (MQ=255) cAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg > 1:558359/1‑223 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat > 1:395769/1‑225 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATaa > 1:324068/1‑251 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATaa > 1:408840/1‑251 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATaa > 1:625355/1‑251 (MQ=255) ggTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg < 1:243357/203‑1 (MQ=255) gTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAggga < 1:342124/205‑2 (MQ=255) gTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg < 1:434242/191‑1 (MQ=255) attaCTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCTTTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTtagtg > 1:228663/1‑250 (MQ=255) ttaCTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTtagtgt > 1:282716/1‑249 (MQ=255) taCTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg < 1:565482/186‑1 (MQ=255) aTCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat > 1:689380/1‑190 (MQ=255) tCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACcac < 1:78445/251‑1 (MQ=255) cGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGat > 1:839672/1‑179 (MQ=255) gtgcacgtaCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg > 1:789176/9‑156 (MQ=255) tgcacgtaCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGgtgttgtgt < 1:780066/239‑1 (MQ=255) gcacgtaCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACaa < 1:278232/222‑1 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGTGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACt < 1:782614/189‑1 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAggga > 1:868967/2‑151 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat > 1:710279/2‑159 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGAc > 1:876917/2‑189 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGa > 1:691729/2‑202 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGAt > 1:560341/2‑250 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATa > 1:791165/2‑251 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg > 1:719189/1‑147 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat < 1:765928/157‑1 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTtag > 1:220775/1‑208 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTAt > 1:728572/1‑241 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGAt < 1:820219/248‑1 (MQ=255) ctgtaGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTg > 1:569384/4‑138 (MQ=255) ctgtaGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGattatt < 1:638858/146‑1 (MQ=255) ctgtaGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGt > 1:511697/4‑187 (MQ=255) ctgtaGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTAc < 1:566742/207‑1 (MQ=255) gtatCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAg > 1:303041/4‑239 (MQ=255) aaGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACaa > 1:498813/1‑205 (MQ=255) gCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTg > 1:532605/1‑141 (MQ=255) gCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTaatat > 1:509928/1‑160 (MQ=255) tgatATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAac < 1:101743/251‑1 (MQ=255) tcAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGt < 1:678073/113‑1 (MQ=255) gTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg > 1:607264/1‑111 (MQ=255) gTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATg < 1:58988/249‑1 (MQ=255) cacaAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGCGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCctt > 1:619879/1‑251 (MQ=255) aactCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATg < 1:594277/233‑1 (MQ=255) actCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCctttactt < 1:42275/249‑1 (MQ=255) ctCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat < 1:279133/105‑1 (MQ=255) ctCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat < 1:332489/105‑1 (MQ=255) ctCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACt > 1:551800/2‑204 (MQ=255) cTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat < 1:660524/104‑1 (MQ=255) cTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGAt < 1:105799/195‑1 (MQ=255) cTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTaa > 1:547299/1‑251 (MQ=255) aCTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCa > 1:834043/1‑251 (MQ=255) cTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATAcccaatt > 1:305685/1‑245 (MQ=255) aaaaTATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGt < 1:498609/251‑1 (MQ=255) gaTTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTg > 1:81503/1‑251 (MQ=255) gTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATgg > 1:406740/1‑144 (MQ=255) gTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCttt > 1:534043/1‑179 (MQ=255) gTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCtt > 1:133029/1‑178 (MQ=255) gTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTgaga < 1:331546/250‑1 (MQ=255) ttttTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATcac > 1:711300/1‑171 (MQ=255) cgtCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGatata > 1:294837/3‑250 (MQ=255) tCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGatatac < 1:642527/250‑3 (MQ=255) tCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGatatac < 1:223233/250‑3 (MQ=255) tCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGatatac < 1:894702/250‑3 (MQ=255) cTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGAGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCt < 1:232166/251‑1 (MQ=255) ttCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAagag < 1:809055/251‑1 (MQ=255) ttCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAagag < 1:368818/251‑1 (MQ=255) ttCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAagag < 1:497566/251‑1 (MQ=255) gaagaTACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACaa > 1:811510/1‑87 (MQ=255) gaagaTACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAAt > 1:293829/1‑251 (MQ=255) gaagaTACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGACGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGAGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTAAAAt > 1:272846/1‑251 (MQ=255) aagaTACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAACTACTAGATGAGGGTATCCTTTACTTTAATTCGCATACCCAATTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGTTGATATACCTCGTTTAAGAGATACTGTTaaaa < 1:494435/249‑1 (MQ=255) | TCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCTCGCACTATTACTATAGTGTCAAGCCGTGATGATATCCAAGGTGAAGTTGCACAAATTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTCACCTCATCTGATGAAATTTCATTTTCAGCAGAAGACACTGTAGGGGTTATTATTGATATCACACATGAGACTAACATAAAGACTATTGTCGAACGAGTTTTTAGTATAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCCATCTCTTTATCACAAAAACTACTAGATGAGGGCATCCTTTACTTTAATTCGCATACTCAGTTAAGTCAGATGGTTGAGAAAATCATTTTAGGTGCTGATATCCCTCGCTTAAGAGATACTGTTAAAAT > 1/1481854‑1482344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |