| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,481,991 | C→T | I26I (ATC→ATT) | unknown → | Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,481,991 | 0 | C | T | 100.0% | 183.0 / NA | 68 | I26I (ATC→ATT) | unknown | Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (42/26); total (42/26) | |||||||||||
AAAACATATCCAATCTATATTGAAGTAGCTCAAATTGCGCCCAAACCGGCACCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCTCGCACTATTACTATAGTGTCAAGCCGTGATGATATCCAAGGTGAAGTTGCACAAATTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTCACCTCATCTGATGAAATTTCATTTTCAGCAGAAGACACTGTAGGGGTTATTATTGATATCACACATGAGACTAACATAAAGACTATTGTCGAACGAGTTTTTAGTATAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCCATCTCTTTATCACAAAAAC > 1/1481752‑1482235 | aaaaTATATCCAATCTATATTGAAGTAGCTCAAATTGCGCAGAGACCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGt < 1:28804/251‑1 (MQ=255) tCCAATCTATATTGAAGTAGCTCAAATTGCCCAGAGACCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACaaa > 1:101749/1‑251 (MQ=255) aTCTATATTGAAGTAGCTCAAATTGCGCAGAGACCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACaaact > 1:659905/1‑247 (MQ=255) aTCTATATTGAAGTAGCTCAAATTGCGCAGAGACCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACaaact > 1:200446/1‑247 (MQ=255) atatTGAAGTAGCTCAAATTGCGCAGAGACCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGt > 1:170678/1‑251 (MQ=255) tatTGAAGTAGCTCAAATTGCGCAGAGACCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTa < 1:286019/251‑1 (MQ=255) atTGAAGTAGCTCAAATTGCGCAGAGACCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTAc < 1:690801/251‑1 (MQ=255) ttGAAGTAGCTCAAATTGCGCAGAGACCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACt < 1:649084/251‑1 (MQ=255) gaCCGGCGCCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGAtt > 1:113693/2‑251 (MQ=255) gtgCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGAt > 1:81237/1‑251 (MQ=255) tCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGAttttttta > 1:289557/1‑249 (MQ=255) tGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCagaag < 1:50804/251‑1 (MQ=255) tcttGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGt < 1:527924/251‑1 (MQ=255) cttGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTa > 1:799743/1‑251 (MQ=255) cTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCtgatg < 1:798203/214‑1 (MQ=255) cTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAggga < 1:250263/247‑2 (MQ=255) cTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGAttat > 1:168698/1‑251 (MQ=255) tAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGAttatta < 1:569616/251‑1 (MQ=255) aaaaGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat < 1:272975/251‑1 (MQ=255) aaaGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAat < 1:138081/170‑1 (MQ=255) gtgtTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACAt > 1:486786/1‑251 (MQ=255) cAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGAttttttt < 1:208536/180‑2 (MQ=255) cAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg > 1:558359/1‑223 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTcgtc > 1:648798/1‑177 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat > 1:395769/1‑225 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATaa > 1:625355/1‑251 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATaa > 1:408840/1‑251 (MQ=255) gTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATaa > 1:324068/1‑251 (MQ=255) ggTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg < 1:243357/203‑1 (MQ=255) gTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAggga < 1:342124/205‑2 (MQ=255) gTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg < 1:434242/191‑1 (MQ=255) attaCTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCTTTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTtagtg > 1:228663/1‑250 (MQ=255) ttaCTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTtagtgt > 1:282716/1‑249 (MQ=255) taCTAGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg < 1:565482/186‑1 (MQ=255) aGATCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGCAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCAttt > 1:75352/1‑163 (MQ=255) aTCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat > 1:689380/1‑190 (MQ=255) tCAAGAAACAATCACGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACcac < 1:78445/251‑1 (MQ=255) cGGCAGACAGTGCACGTACTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGat > 1:839672/1‑179 (MQ=255) gtgcacgtaCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg > 1:789176/9‑156 (MQ=255) tgcacgtaCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGgtgttgtgt < 1:780066/239‑1 (MQ=255) gcacgtaCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACaa < 1:278232/222‑1 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGTGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACt < 1:782614/189‑1 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCtgatg > 1:223572/2‑119 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAggga > 1:868967/2‑151 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat > 1:710279/2‑159 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGAc > 1:876917/2‑189 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGa > 1:691729/2‑202 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGAt > 1:560341/2‑250 (MQ=255) taCTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATa > 1:791165/2‑251 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCtgatg > 1:422225/1‑117 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAg > 1:719189/1‑147 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATtattat < 1:765928/157‑1 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTtag > 1:220775/1‑208 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTAt > 1:728572/1‑241 (MQ=255) cTATTACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGAt < 1:820219/248‑1 (MQ=255) ttACTGTAGTATCAAGCCGTGATGATATTCAAGGTGAAGCTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCt > 1:2161/1‑105 (MQ=255) ctgtaGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTg > 1:569384/4‑138 (MQ=255) ctgtaGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGattatt < 1:638858/146‑1 (MQ=255) ctgtaGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGt > 1:511697/4‑187 (MQ=255) ctgtaGTATCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTAc < 1:566742/207‑1 (MQ=255) gtatCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCagaagat < 1:404037/126‑2 (MQ=255) gtatCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAg > 1:303041/4‑239 (MQ=255) atCAAGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCagaagat > 1:68192/2‑126 (MQ=255) aaGCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACaa > 1:498813/1‑205 (MQ=255) gCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTg > 1:532605/1‑141 (MQ=255) gCCGTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTaatat > 1:509928/1‑160 (MQ=255) gTGATGATATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCAtt > 1:736425/1‑106 (MQ=255) tgatATTCAAGGTGAAGTTGCACAAACTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTTACCTCGTCTGATGAGATTTCATTTTCAGCAGAAGATACTGTAGGGATTATTATTGATATCACACATGAAACTAATATAAAGACTATTGTCGAACGAGTTTTTAGTGTAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCAATCTCTTTATCACAAAAac < 1:101743/251‑1 (MQ=255) | AAAACATATCCAATCTATATTGAAGTAGCTCAAATTGCGCCCAAACCGGCACCTTGTGCATATCGTACCGGAGAAGTAGTTTTTTGGAATTCTAATGAGACTTCTTGTGCACTTAAAAGTAATCAGCGTGTTCAATTGAAGTATTAATAGAAGGTATTTTTTATGTTATTACTAGATCAAGAAACAATCACGGCAGACAGTGCTCGCACTATTACTATAGTGTCAAGCCGTGATGATATCCAAGGTGAAGTTGCACAAATTCTACGTACTCGCGGTCTTGAAAATATTGAGATTGTTAAAAAGGATTTTTTCACCTCATCTGATGAAATTTCATTTTCAGCAGAAGACACTGTAGGGGTTATTATTGATATCACACATGAGACTAACATAAAGACTATTGTCGAACGAGTTTTTAGTATAGTACCACAAAATGTATGGTGTTGTGTTATCGGTGATAGTGACTCCATCTCTTTATCACAAAAAC > 1/1481752‑1482235 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |