Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,479,058 G→A E117K (GAA→AAA)  unknown → Type IV prepilin peptidase TadV/CpaA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,479,0580GA100.0% 211.0 / NA 79E117K (GAA→AAA) unknownType IV prepilin peptidase TadV/CpaA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (34/45);  total (34/45)

CGTCATTATTCCGTTCAGTTTATTAAAATATCAGACTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGATTTTTACTGTTTTCTTTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGCTAGCCGTTCCAAGTGACGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTGAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAGACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTATGTTTATGCCAACATTTGACAATACTGAAAATCAACAAACAATAAT  >  1/1478826‑1479299
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                 
cGTCATTATTCCGTTCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAg                                                                                                                                                                                                                                       >  1:280236/1‑245 (MQ=255)
  tCATTATTCCGTTCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGa                                                                                                                                                                                                                               >  1:827947/1‑251 (MQ=255)
  tCATTATTCCGTTCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGa                                                                                                                                                                                                                               >  1:826724/1‑251 (MQ=255)
             ttCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:561265/251‑1 (MQ=255)
             ttCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:110335/251‑1 (MQ=255)
             ttCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:127181/251‑1 (MQ=255)
             ttCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:769734/251‑1 (MQ=255)
             ttCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:815895/251‑1 (MQ=255)
              tCAGTTTATTAAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGc                                                                                                                                                                                                                   <  1:656456/251‑1 (MQ=255)
                    tattaAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTCGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:205104/244‑1 (MQ=255)
                     attaAAATATCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCaa                                                                                                                                                                                                            >  1:852896/1‑251 (MQ=255)
                           atatCAGGCTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAg                                                                                                                                                                                                               >  1:563679/1‑242 (MQ=255)
                                  gcTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGTCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGc                                                                                                                                                                                                 <  1:668169/248‑1 (MQ=255)
                                   cTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCttt                                                                                                                                                                                              >  1:718166/1‑251 (MQ=255)
                                     aTCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAg                                                                                                                                                                                                                                       >  1:579504/1‑208 (MQ=255)
                                     aTCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTAt                                                                                                                                                                                            >  1:39268/1‑251 (MQ=255)
                                      tCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:179622/226‑1 (MQ=255)
                                       cTTTGTTATTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGa                                                                                                                                                                                          <  1:760276/251‑1 (MQ=255)
                                              aTTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCaa                                                                                                                                                                                                            <  1:784945/226‑1 (MQ=255)
                                              aTTCCCGCCTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACAt                                                                                                                                                                                   <  1:523917/251‑1 (MQ=255)
                                                     ccTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:568591/211‑1 (MQ=255)
                                                      cTTATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAAtt                                                                                                                                                                                                                                           <  1:874701/187‑1 (MQ=255)
                                                        tATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGcc                                                                                                                                                                                                      <  1:169970/222‑1 (MQ=255)
                                                        tATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGc                                                                                                                                                                                                       <  1:605452/221‑1 (MQ=255)
                                                        tATGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGctc                                                                                                                                                                              <  1:281133/246‑1 (MQ=255)
                                                         aTGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCaa                                                                                                                                                                                                            >  1:180612/1‑215 (MQ=255)
                                                         aTGTACACTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCaa                                                                                                                                                                        >  1:577784/1‑251 (MQ=255)
                                                                cTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    >  1:206620/1‑200 (MQ=255)
                                                                cTTATTATCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGc                                                                                                                                                                                                       >  1:478321/1‑213 (MQ=255)
                                                                   attatCGGGTTTTTACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTa                                                                                                                                                                                                                                          >  1:270233/1‑175 (MQ=255)
                                                                           gtttttACTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGc                                                                                                                                                                                                       >  1:568390/2‑202 (MQ=255)
                                                                                  cTGTTTTCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGcc                                                                                                                                                                                                      >  1:884409/1‑196 (MQ=255)
                                                                                     ttttCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAactttac                                                                                                                                            <  1:568937/251‑1 (MQ=255)
                                                                                      tttCTCTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAAc                                                                                                                                                                                     >  1:690559/1‑209 (MQ=255)
                                                                                                cTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGaa                                                                                                                                                                                                                                     <  1:520630/151‑1 (MQ=255)
                                                                                                cTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:102895/168‑1 (MQ=255)
                                                                                                cTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCaa                                                                                                                                                                                                            <  1:11944/176‑1 (MQ=255)
                                                                                                 ttCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAAtt                                                                                                                                <  1:659124/251‑1 (MQ=255)
                                                                                                  tCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    >  1:281136/1‑166 (MQ=255)
                                                                                                       ggTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGgaaac                                                                                                                                                 <  1:99456/228‑4 (MQ=255)
                                                                                                        gTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATttaattaa                                                                                                                         >  1:192442/1‑251 (MQ=255)
                                                                                                        gTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATttaattaa                                                                                                                         >  1:273987/1‑251 (MQ=255)
                                                                                                                 atatTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:228207/151‑1 (MQ=255)
                                                                                                                 atatTAAGCTTGCTTCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAaatta                                                                                                                                                                    <  1:624023/199‑1 (MQ=255)
                                                                                                                          ttgcttCGGTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTAc                                                                                                       <  1:804268/251‑1 (MQ=255)
                                                                                                                                  gTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGc                                                                                                                                                                                                       >  1:102771/1‑147 (MQ=255)
                                                                                                                                  gTGCTAATGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACa                                                                                                                                                                                    <  1:578548/166‑1 (MQ=255)
                                                                                                                                       aaTGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGcc                                                                                                                                                                                                      <  1:885175/143‑1 (MQ=255)
                                                                                                                                       aaTGTTAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGc                                                                                                                                                                                                       <  1:624958/142‑1 (MQ=255)
                                                                                                                                        atgttAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCaa                                                                                                                                                                                                            >  1:32989/5‑136 (MQ=255)
                                                                                                                                        atgttAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAAttt                                                                                                                                                                >  1:859464/5‑180 (MQ=255)
                                                                                                                                         tgttAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATc                                                                                        <  1:400487/248‑1 (MQ=255)
                                                                                                                                            tAGCCGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCAtt                                                                                     >  1:148298/1‑251 (MQ=255)
                                                                                                                                               ccGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTc                                                                                   <  1:25454/250‑1 (MQ=255)
                                                                                                                                                cGTTCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAg                                                                                 <  1:55034/251‑1 (MQ=255)
                                                                                                                                                  ttCCAAGTGAGGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCt                                                                                                                                                                                                >  1:618773/1‑138 (MQ=255)
                                                                                                                                                               aaTTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCgg                                                                  <  1:690115/251‑1 (MQ=255)
                                                                                                                                                               aaTTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATGAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCgg                                                                  <  1:456567/251‑1 (MQ=255)
                                                                                                                                                                aTTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATc                                                                                        >  1:747055/1‑228 (MQ=255)
                                                                                                                                                                         tttttcttCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATtgg                                                        >  1:803284/1‑251 (MQ=255)
                                                                                                                                                                                 cttTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTa                                                >  1:325555/1‑251 (MQ=255)
                                                                                                                                                                                   ttACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAggg                                                                                                                      <  1:144929/179‑1 (MQ=255)
                                                                                                                                                                                      caacaTTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTATGttt                                           <  1:455298/251‑1 (MQ=255)
                                                                                                                                                                                        acaTTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTaaaaaa                                                                                                               >  1:134818/1‑181 (MQ=255)
                                                                                                                                                                                                  gATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAg                                                                                 <  1:420741/201‑1 (MQ=255)
                                                                                                                                                                                                     tGGGACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCCTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTATGTTTATGCCAGCATTTGAc                            <  1:433269/251‑1 (MQ=255)
                                                                                                                                                                                                       ggACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTttgat                                                                                                                                                            <  1:72512/121‑1 (MQ=255)
                                                                                                                                                                                                        gACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAAc                                                                                                                                                                                     <  1:598559/95‑1 (MQ=255)
                                                                                                                                                                                                        gACTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTATGTTTATGCCAGCATTTGACAAt                         >  1:221779/1‑251 (MQ=255)
                                                                                                                                                                                                          cTAATTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTATGTTTATGCCAGCATTTGACAATAc                       <  1:583586/251‑1 (MQ=255)
                                                                                                                                                                                                            aaTTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATgg                                                                                                                                                                                                                    <  1:575325/60‑1 (MQ=255)
                                                                                                                                                                                                            aaTTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAact                                                                                                                                                >  1:265919/1‑128 (MQ=255)
                                                                                                                                                                                                            aaTTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAAc                                                                                                  >  1:672617/1‑174 (MQ=255)
                                                                                                                                                                                                            aaTTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATc                                                                                        >  1:262210/1‑184 (MQ=255)
                                                                                                                                                                                                            aaTTATTATCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATtggtg                                                      <  1:608900/218‑1 (MQ=255)
                                                                                                                                                                                                              ttattaTCGGTTGGTTATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGc                                                                              <  1:56430/192‑1 (MQ=255)
                                                                                                                                                                                                                          ggttATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAactttactt                                                                                                                                          >  1:898312/1‑120 (MQ=255)
                                                                                                                                                                                                                            ttATTTTTCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTATGTTTATGCCAGCATTTGACAATACTGAAAATCAACAAACaat     >  1:109763‑M1/1‑248 (MQ=255)
                                                                                                                                                                                                                               tttttCCGTAAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAAACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTATGTTTATGCCAGCATTTGACAATACTGAAAATCAACAAACaataat  <  1:665856‑M1/251‑7 (MQ=255)
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                 
CGTCATTATTCCGTTCAGTTTATTAAAATATCAGACTATCTTTGTTATTCCCGCCTTATGTACACTTATTATCGGATTTTTACTGTTTTCTTTGCACTTCATAGGTGCAGGAGATATTAAGCTTGCTTCGGTGCTAATGCTAGCCGTTCCAAGTGACGAAATTTTTTCTTTTTTCTTCTTTACAACATTTGCCGGATTGGGACTAATTATTATCGGTTGGTTATTTTTCCGTGAATCAATTAAAGAAAACGGATTGCCTTATGGCGTAGCAATAAGCCTTGGCTTTATGATAAACATGGCTCTATCAAATTAATTTTGATTGAGCGGAGACTTTACTTTGTTAAAATTTAATTAAGGGTAAAAAATGAATTACAGAACGCTCTTGATCATTTCAGTGCTTACGCTAGCGGTTGGCATTGGTGGCATTATGTTTATGCCAACATTTGACAATACTGAAAATCAACAAACAATAAT  >  1/1478826‑1479299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑