| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,476,761 | C→T | V8I (GTT→ATT) | unknown ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,476,761 | 0 | C | T | 100.0% | 61.7 / NA | 28 | V8I (GTT→ATT) | unknown | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (11/17); total (11/17) | |||||||||||
TTGCTTGCCCAATTCCGGTAACAAACAATATTCCAGGTTATTTTTGGCTAAAATGAATTTTTCCATGTCTTCCGTGGAAATTTTGTATCTTGGATCCTGATATTTCGGTTCATGCGTGCGGCGGATGCTGAAAACGGCATGTTCTTCATCGTCATTATGCTGCACGGAAAAGGA‑CGGATAACTGGGCTCAAATTGCGGATAAGGATAATAACCCGCGCAGGCGGTTAAAATAGAAATCGGTAAAACAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TT‑AGGTTGAAAATAGATGAATCATTGCCTCGCTGCAGCAACCTTAAAAGTCCGAATTACGTGTAACTATATATGATATGGCTTTAATATAAATGGCGACTGAAGCAAGAATGCCCGTTTGACCCTGATTTTCCGAAATAG‑TTTACGCATTCCGAATTTTTCTTACTTCTCGCTCAGATACGGATCGACAAAG > 1/1476516‑1476982 | ttgcttgcCCAATTCCGGCAACAAACAATATTCCAAGTTATTTTTGGCTAAAATGAATTTTTCCATGTCTTCTGTGGAAATTTTGTATCTCGGATCCTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATaagta < 1:664378/251‑1 (MQ=255) cttgcCCAATTCCGGCAACAAACAATATTCCAAGTTATTTTTGGCTAAAATGAATTTTTCCATGTCTTCTGTGGAAATTTTGTATCTCGGATCCTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAAtaagtaag < 1:586646/250‑1 (MQ=255) acaaTATTCCAAGTTATTTTTGGCTAAAATGAATTTTTCCATGTCTTCTGTGGAAATTTTGTATCTCGGATCCTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTcc < 1:417865/251‑1 (MQ=255) caaTATTCCAAGTTATTTTTGGCTAAAATGAATTTTTCCATGTCTTCTGTGGAAATTTTGTATCTCGGATCCTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATaag < 1:318695/224‑1 (MQ=255) aaTTTTTCCATGTCTTCTGTGGAAATTTTGTATCTCGGATCCTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTgtcc < 1:23965/250‑4 (MQ=255) tttttCCATGTCTTCTGTGGAAATTTTGTATCTCGGATCCTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTgtcccgc < 1:772262/251‑7 (MQ=255) aTCTCGGATCCTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACgt < 1:215132/251‑1 (MQ=255) gATCCTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAAc < 1:357354/250‑1 (MQ=255) cTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACcatat < 1:231242/251‑1 (MQ=255) cTGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACcatat < 1:693307/251‑1 (MQ=255) tGATATTTCGGTTCATGCGTGCGGCGGGTGCTGAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACcatata < 1:135765/251‑1 (MQ=255) gAAAACGGCATTTTCTTCATCATCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATaagtaagt < 1:673166/125‑1 (MQ=255) catCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGGAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAAAAGATTAATCATTTTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCatatat > 1:762781/3‑200 (MQ=255) tCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACcatat < 1:819786/196‑1 (MQ=255) tCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCATatatggc < 1:593899/201‑3 (MQ=255) tCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGGAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGGTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAACCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGACCCTGTTTTTCCGaa > 1:710923/1‑251 (MQ=255) tCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAAAAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGGTGAAAATAGATTAATCATTGTTCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGACCCCGTTTTTc > 1:143318/1‑247 (MQ=255) tCATTATGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAAAAGAAAACGGTAAAATAAGTAAGTATTTTTTTAACATGATATTTCT‑TT‑AGGTTGAAAAAAGATTAATCATTGTCCCGCTGCAGCAACCTTaaaaacctgaattaagt > 1:840948/1‑173 (MQ=255) aTGCTGCACGG‑AAGGGACCGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAAt < 1:409835/133‑1 (MQ=255) ggaccGGATAACCAGGTTCAAATTGCGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGACCCTGTTTTTCCGAAATAG‑ttttacac > 1:396556/5‑239 (MQ=255) cGGATAAGGATAATAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGACCCTGTTTTTCCGAAATAGTTTTACACTTTCCGACTTTTTCTTACTTCTCGCTCAGATa < 1:711569/251‑1 (MQ=255) ggataaTAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCCTTT‑AGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAAAGCCCGTTTGACCCTGTTTTTTCGAAATAGTTTTACACTTTCCGCCTTTTTCTTACTTCTCGCTCAGATACGGATc > 1:43973/1‑250 (MQ=255) ggataaTAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGGTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGAccc > 1:330856/1‑188 (MQ=255) ggataaTAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAATAAGTATTTTTTTTACATGATA‑TTCC‑TTCAGGTTGAAAAAAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAA‑‑‑‑ACAT‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGGTTGACCCTGTTTTTTCGAAATAGTTTTACACTTTTCGACTTTTTTTTACTTCTCGCTCAGATACGGATCg > 1:386685/1‑251 (MQ=255) gataaTAACCGGCACAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGGTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGACCCTGTTTTTCCGAAATAGTTTTACACTTTCCGACTTTTTCTTACTTCTCGCTCAGATACGGAt < 1:444596/248‑1 (MQ=255) aaccggcacAGGCGGTTAAAATAGAAATCGGTAAAATAAGTAAGGATTTTTTTTACATGATA‑TTTC‑TTCAGGGTGGAAATAGATTAATTATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAAAGCCCGTTTGACCCTGTTTTTTCGAAATAGTTTTACACTTTCCGACTTTTTCTTACTTCTCGCTCAGATACGGATCGACAaag > 1:189979/9‑250 (MQ=255) aaccggcacAGGCGGTTAAAATAGAAATCGGGAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGACCCTGTTTTTCCGAAATAGTTTTACACTTTCCGACTTTTTCTTACTTCTCGCTCAGATACGGAt > 1:580545/9‑242 (MQ=255) gTTAAAATAGAAATCGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGACCCTGTTTTTCCGAAATAG‑ttttacac > 1:771184/1‑186 (MQ=255) cGGTAAAATAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TTCAGGTTGAAAATAGATTAATCATTGTCCCGCTGCAGCAACCTTAAAAGCCTGAATTACGTATAACCAT‑‑‑‑‑ATATGGCTTT‑‑‑‑T‑AATGGCAACTGAAGCAAGAATGCCCGTTTGACCCTGTTTTTCCGAAATAGTTTTACACTCTCCGACTTTTTCTTACTTCTCGCTCAGATAc < 1:42256/210‑1 (MQ=255) | TTGCTTGCCCAATTCCGGTAACAAACAATATTCCAGGTTATTTTTGGCTAAAATGAATTTTTCCATGTCTTCCGTGGAAATTTTGTATCTTGGATCCTGATATTTCGGTTCATGCGTGCGGCGGATGCTGAAAACGGCATGTTCTTCATCGTCATTATGCTGCACGGAAAAGGA‑CGGATAACTGGGCTCAAATTGCGGATAAGGATAATAACCCGCGCAGGCGGTTAAAATAGAAATCGGTAAAACAAGTAAGTATTTTTTTAACATGATA‑TTCC‑TT‑AGGTTGAAAATAGATGAATCATTGCCTCGCTGCAGCAACCTTAAAAGTCCGAATTACGTGTAACTATATATGATATGGCTTTAATATAAATGGCGACTGAAGCAAGAATGCCCGTTTGACCCTGATTTTCCGAAATAG‑TTTACGCATTCCGAATTTTTCTTACTTCTCGCTCAGATACGGATCGACAAAG > 1/1476516‑1476982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |