| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,473,517 | C→A | intergenic (‑31/+424) | unknown ← / ← unknown | Transcription‑repair coupling factor/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,473,517 | 0 | C | A | 100.0% | 190.3 / NA | 70 | intergenic (‑31/+424) | unknown/unknown | Transcription‑repair coupling factor/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (32/38); total (32/38) | |||||||||||
TTGCAATAATTCGGAAGGCGTCAGTTGCGTTAATTCTTTCGCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAGACCGTCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCACCGGGCAGGATATTGGCTAAAATTTTATGATCATTCGCTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAATTGCCGTTAGTTTAGCGCAAACGAGGGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAGGCATTGCCTCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATATTTTTTTAAATATCTTGCCTTCCTCCGTTTACGGGGGGACAAAACGCATTGCGTTTTGAGCGTTGGCTCTGCCAACGCCCCCAAAGGGGTGAGCAAGTAAGTTTACGAAC > 1/1473277‑1473750 | ttGCAATAATTCGGAAGGCGCCAGTTGCTTTAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAg < 1:675624/251‑1 (MQ=255) cAATAATTCGGAAGGCGCCAGTTGCTTTAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAgcgc < 1:1199/251‑1 (MQ=255) cAATAATTCGGAAGGCGCCAGTTGCTTTAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAgcgc < 1:627496/251‑1 (MQ=255) cAATAATTCGGAAGGCGCCAGTTGCTTTAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAgcg > 1:522643/1‑250 (MQ=255) atTCGGAAGGCGCCAGTTGCTTTAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGttt < 1:829306/241‑1 (MQ=255) gAAGGCGCCAGTTGCTTTAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAAcaagagg > 1:894566/1‑245 (MQ=255) gcgccAGTTGCTTTAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACCTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGa < 1:121495/245‑1 (MQ=255) cgccAGTTGCTTTAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGCAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGAttt > 1:704290/4‑251 (MQ=255) ctttAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAg < 1:656090/249‑1 (MQ=255) tAATTCTTTTTCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATc < 1:840851/251‑1 (MQ=255) ctttttccAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGtat < 1:776527/245‑1 (MQ=255) tccAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGa > 1:50440/2‑239 (MQ=255) aaaCGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGAc < 1:743210/251‑1 (MQ=255) aCGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAg > 1:825235/1‑251 (MQ=255) cacTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATc < 1:138935/228‑1 (MQ=255) cacTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTc > 1:283888/1‑249 (MQ=255) cacTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTa > 1:360668/1‑251 (MQ=255) cacTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTa > 1:149408/1‑251 (MQ=255) acTTCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATTATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTAc < 1:721011/251‑1 (MQ=255) ttCGGGTGTCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGtat < 1:725147/230‑1 (MQ=255) tgtCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGc < 1:821116/250‑1 (MQ=255) tCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGa > 1:96341/1‑202 (MQ=255) tCATTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCaaa > 1:109007/1‑250 (MQ=255) aTTGGTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCaaagc < 1:33380/251‑4 (MQ=255) ggTCACCACCACGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCaaagc > 1:244246/1‑245 (MQ=255) ccaccacGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAg < 1:828190/218‑1 (MQ=255) cacGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGt < 1:121391/251‑1 (MQ=255) cGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTc < 1:407001/222‑1 (MQ=255) cGGTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTAt > 1:628819/1‑251 (MQ=255) ggTTAAACCATCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGa > 1:401968/1‑198 (MQ=255) ttaaaccatCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTAc < 1:500241/243‑1 (MQ=255) ttaaaccatCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTAc < 1:14436/243‑1 (MQ=255) aaaccatCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAg < 1:364516/245‑1 (MQ=255) aaaccatCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAg < 1:317448/245‑1 (MQ=255) ccatCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATTCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAAGAATTTCGAGATGAAAAAATTGAGGTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAgttg < 1:435030/248‑1 (MQ=255) ccatCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCt > 1:36304/4‑219 (MQ=255) cGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGc < 1:358348/202‑1 (MQ=255) cGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAAt > 1:753180/1‑245 (MQ=255) cGCTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTg > 1:292915/1‑251 (MQ=255) cTAATGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGat < 1:108388/251‑1 (MQ=255) tGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGAc > 1:44520/1‑178 (MQ=255) tGGCGAGGCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAAt > 1:241638/1‑239 (MQ=255) ggCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCt < 1:12296/185‑1 (MQ=255) gCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATtat > 1:241559/1‑229 (MQ=255) gCTATCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATAttttttaaat > 1:361648/1‑247 (MQ=255) aTCCGCGCCGGGCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTAc > 1:564625/1‑208 (MQ=255) gggCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAAt < 1:749444/220‑1 (MQ=255) gCAGGATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAg < 1:106296/155‑1 (MQ=255) ggATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATc > 1:257155/1‑141 (MQ=255) ggATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAg < 1:16175/152‑1 (MQ=255) ggATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCaaagc > 1:286495/1‑174 (MQ=255) ggATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATA‑TTTTTTAAATATCTTGCCTTCCTCCGt > 1:849332/1‑251 (MQ=255) gATATTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTAc > 1:296127/1‑193 (MQ=255) atatTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAg < 1:546378/150‑1 (MQ=255) atatTGGCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGccc > 1:705800/1‑181 (MQ=255) ggCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAAt > 1:93422/1‑153 (MQ=255) gCTAAAATTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATA‑TTTTTTAAATATCTTGCCTTCCTCCGTTTACggg < 1:790940/250‑1 (MQ=255) aaTTTTATGATCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATA‑TTTTTTAAATATCTTGCCTTCCTCCGTTTACGGGGGGACa > 1:793962/1‑251 (MQ=39) aTCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATA‑TTTTTTAAATATCTTGCCTTCCTCCGTTTACggg < 1:616048/236‑1 (MQ=39) tCATTCACTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGc < 1:629550/149‑1 (MQ=255) cacTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATA‑TTTTTTAAATATCTTGCCTTCCTCCGTTTACGGGGGGACAAAACGCATTGCGttt > 1:94864/3‑251 (MQ=38) gggTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTAc < 1:822983/161‑1 (MQ=255) ggTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGt < 1:749997/155‑1 (MQ=255) aaaaaaTTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAg > 1:123378/1‑100 (MQ=255) aaaaTTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTAc < 1:772607/140‑1 (MQ=255) aaTTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTc > 1:583595/1‑161 (MQ=255) tGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATA‑TTTTTTAAATATCTTGCCTTCCTCCGTTTACGGGGGGACAAAACGCATTGCGTTTTGAGCATTGGCTCTGCCAACGCCCCCAAAgg < 1:598920/251‑1 (MQ=37) aCAAAAGAGTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTc > 1:707718/1‑141 (MQ=255) agTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATA‑TTTTTTAAATATCTTGCCTTCCTCCGTTTACGGGGGGACAAAACGCATTGCGTTTTGAGCATTGGCTCTGCCAACGCCCCCAAAGGGGTGAGCAAGTAAGTTTACGaa < 1:123398/249‑1 (MQ=25) agTAAGAAAAAAGTTGCAGTTAGTTTAGCGCAAACAAGAGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAAGCATTGCCCCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATA‑TTTTTTAAATATCTTGCCTTCCTCCGTTTACGGGGGGACAAAACGCATTGCGTTTTGAGCATTGGCTCTGCCAACGCCCCCAAAGGGGTGAGCAAGTAAGTTTACGAAc < 1:454584/250‑1 (MQ=25) | TTGCAATAATTCGGAAGGCGTCAGTTGCGTTAATTCTTTCGCCAAACGCACCGCACTTCGGGTGTCATTGGTCACCACCACGGTTAGACCGTCAAACTGCGCGGCAATTTCGCTAATGGCGAGGCTATCCGCACCGGGCAGGATATTGGCTAAAATTTTATGATCATTCGCTTGGGTAGGAATTTCGAGATGAAAAAATTGAGTTTGCATAAAACGACAAAAGAGTAAGAAAAAAATTGCCGTTAGTTTAGCGCAAACGAGGGGGATTTCCAATAAAGATCTGTATAAAAAGACAGTAATTCTACCTAGGGCAAGGCATTGCCTCGGGTATTACAGTTGTTCGAAACATTATAATTCATTGATATTTTTTTAAATATCTTGCCTTCCTCCGTTTACGGGGGGACAAAACGCATTGCGTTTTGAGCGTTGGCTCTGCCAACGCCCCCAAAGGGGTGAGCAAGTAAGTTTACGAAC > 1/1473277‑1473750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |