Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,387,346	C→T	T11I (ACT→ATT)	unknown →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,387,346	0	C	T	100.0%	203.0 / NA	72	T11I (ACT→ATT)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (38/34);  total (38/34)

TAACGACATCAAATCCTGGTGGACCGCCGGCGCCATCATTGCCTTCGGCAGCTTAATCGTCCACTTAACTATCGGTATGGCGTGGTGGGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGACTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTGGGTGTTGCCTCTTTTTATCTGGGCTTTA  >  1/1387111‑1387591                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                      taACGACATCAAATCCTGGTGGACCGCCGGCGCCATCATTGCCTTCGGCAGCTTAATCGTCCACTTAACTATCGGTATGGCGTGGTGGGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAAt                                                                                                                                                                                                                                        <  1:21963/251‑1 (MQ=255)                 tggtggACCGCCGGCGCCATCATTGCCTTCGGCAGCTTAATCGTCCACTTAACTATCGGTATGGCGTGGTGGGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCaaa                                                                                                                                                                                                                        <  1:478387/251‑1 (MQ=255)                                                 cAGCTTAATCGTCCACTTAACTATCGGTATGGCGTGGTGGGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAAt                                                                                                                                                                                                             >  1:618799/1‑230 (MQ=255)                                                            tCCACTTAACTATCGGTATGGCGTGGTGGGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTa                                                                                                                                                                              <  1:275978/250‑1 (MQ=255)                                                            tCCACTTAACTATCGGTATGGCGTGGTGGGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTa                                                                                                                                                                              <  1:675455/250‑1 (MQ=255)                                                                cTTAACTATCGGTATGGCGTGGTGGGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCg                                                                                                                                                                                         >  1:182674/1‑235 (MQ=255)                                                                                     gtggGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGccc                                                                                                                                                                                                                           <  1:348105/180‑1 (MQ=255)                                                                                      tggGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGc                                                                                                                                                    <  1:18320/250‑1 (MQ=255)                                                                                                                gTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTa                                                                                                                                                               >  1:654722/1‑213 (MQ=255)                                                                                                                       gAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTa                                                                                                                                                                              <  1:616833/191‑1 (MQ=255)                                                                                                                            atatAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAg                                                                                                                                                                            <  1:506644/188‑1 (MQ=255)                                                                                                                                     aaCTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTc                                                                                                                                                            >  1:484232/1‑195 (MQ=255)                                                                                                                                          aaaTGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGAt                                                                                                                                                                                                 >  1:6972/1‑153 (MQ=255)                                                                                                                                            aTGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAAc                                                                                             <  1:242632/251‑1 (MQ=255)                                                                                                                                              gATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGa                                                                                                    >  1:639503/1‑242 (MQ=255)                                                                                                                                               aTTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTc                                                                                                                                                                                    >  1:510538/1‑161 (MQ=255)                                                                                                                                                        tCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGaaaaa                                                                                 >  1:286890/1‑251 (MQ=255)                                                                                                                                                           cTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTG‑TACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAatat                                                                             >  1:21599/1‑251 (MQ=255)                                                                                                                                                                 aaCCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTa                                                                                                                                                                              <  1:369656/149‑1 (MQ=255)                                                                                                                                                                     gCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATg                                                                                                                                                                                           <  1:702133/132‑1 (MQ=255)                                                                                                                                                                         aaTATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATT‑AGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTa                                                               <  1:464360/251‑1 (MQ=255)                                                                                                                                                                              cGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAg                                                             >  1:368141/1‑249 (MQ=255)                                                                                                                                                                               gTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAgg                                                                                                                                                                                                                      >  1:74648/1‑95 (MQ=255)                                                                                                                                                                               gTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGc                                                                                                                                                    >  1:732085/1‑161 (MQ=255)                                                                                                                                                                               gTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCtt                                                          >  1:497509/1‑251 (MQ=255)                                                                                                                                                                                  tAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATc                                                       <  1:833293/251‑1 (MQ=255)                                                                                                                                                                                     tACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTgc                                                    <  1:111125/251‑1 (MQ=255)                                                                                                                                                                                       cAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGAttc                                                                                                                                   >  1:764701/1‑170 (MQ=255)                                                                                                                                                                                         gATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCtt                                                >  1:396333/1‑251 (MQ=255)                                                                                                                                                                                             aaTTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGc                                                                                                  <  1:376181/197‑1 (MQ=255)                                                                                                                                                                                             aaTTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTa                                            >  1:683895/1‑251 (MQ=255)                                                                                                                                                                                              aTTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGAt                                                                                                                                                                                                 >  1:68895/1‑101 (MQ=255)                                                                                                                                                                                                 tAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGc                                        <  1:410474/251‑1 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTa                                                                                                                                                                              >  1:107839/1‑111 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGAttcttc                                                                                                                                <  1:781912/157‑1 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTAcc                                                                                                                     >  1:656895/1‑168 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTattgat                                                                                                              >  1:557751/1‑175 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTat                                                                                                                  <  1:176754/171‑1 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTa                                                                                                        <  1:714770/181‑1 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATAc                                                                 >  1:130952/1‑220 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAGGCTTATCTGCGCTTTCTATTGCAACGGt                                  >  1:641700/1‑251 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGt                                  >  1:643558/1‑251 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGt                                  >  1:22081/1‑251 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGt                                  >  1:753813/1‑251 (MQ=255)                                                                                                                                                                                                       gTATATATGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGt                                  >  1:792521/1‑251 (MQ=255)                                                                                                                                                                                                         atatatGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTattgat                                                                                                              >  1:212687/1‑173 (MQ=255)                                                                                                                                                                                                         atatatGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAAc                                                                                             <  1:15514/190‑1 (MQ=255)                                                                                                                                                                                                           atatGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGa                                                                                                    >  1:531560/1‑181 (MQ=255)                                                                                                                                                                                                           atatGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATAc                                                                 <  1:315361/216‑1 (MQ=255)                                                                                                                                                                                                           atatGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTg                                                     <  1:131772/228‑1 (MQ=255)                                                                                                                                                                                                           atatGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGc                                        <  1:371450/241‑1 (MQ=255)                                                                                                                                                                                                           atatGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTg                              >  1:638366/1‑251 (MQ=255)                                                                                                                                                                                                             atGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTggg                            <  1:278761/251‑1 (MQ=255)                                                                                                                                                                                                              tGGAAATGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTGGgt                           <  1:280843/251‑1 (MQ=255)                                                                                                                                                                                                                   aTGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTattgat                                                                                                              <  1:191364/163‑1 (MQ=255)                                                                                                                                                                                                                    tGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGTAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACatgaa                                                                                        >  1:478583/1‑184 (MQ=255)                                                                                                                                                                                                                    tGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTAcc                                                                                                                     <  1:445657/155‑1 (MQ=255)                                                                                                                                                                                                                    tGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTaa                                                              <  1:721293/210‑1 (MQ=255)                                                                                                                                                                                                                    tGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTGGGTGTTGc                      >  1:184623/1‑250 (MQ=255)                                                                                                                                                                                                                    tGTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAAGAGCAAAACATGAACGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTggg                            >  1:441568/1‑244 (MQ=255)                                                                                                                                                                                                                     gTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAg                                                                                                                                                                            <  1:1314/99‑1 (MQ=255)                                                                                                                                                                                                                     gTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAAt                                                                        <  1:852863/199‑1 (MQ=255)                                                                                                                                                                                                                     gTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTg                                                     <  1:618734/218‑1 (MQ=255)                                                                                                                                                                                                                     gTTACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGAAGCAAAACATGAATGAAAAAATATTCAATgg                                                                      >  1:428679/1‑201 (MQ=255)                                                                                                                                                                                                                      ttACAGCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCggg                                                                                                                            >  1:464141/1‑146 (MQ=255)                                                                                                                                                                                                                           gCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTggg                            <  1:411017/237‑1 (MQ=255)                                                                                                                                                                                                                           gCTTTTTTTATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTGGGTGTTGCCTCttttt              >  1:680422/1‑251 (MQ=255)                                                                                                                                                                                                                              ttttttATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTGGGTGTTGCCTCTTTTTATc           <  1:721523/251‑1 (MQ=255)                                                                                                                                                                                                                                  ttATATTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACat                                                                                           <  1:814239/167‑1 (MQ=255)                                                                                                                                                                                                                                    atatTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTaa                                                              >  1:797573/1‑194 (MQ=255)                                                                                                                                                                                                                                      atTTGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCAtttt                                                                                                                                                                    >  1:692561/1‑90 (MQ=255)                                                                                                                                                                                                                                       tttGATTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTGGGTGTTGCCTCTTTTTATCTGGGCTTTa  >  1:288510/1‑251 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                      TAACGACATCAAATCCTGGTGGACCGCCGGCGCCATCATTGCCTTCGGCAGCTTAATCGTCCACTTAACTATCGGTATGGCGTGGTGGGAATTCCTGTTCAATTTAGCTTAGTTGTAAGAAAAATATAGAATAACTAAAATGATTCTATCTTCACTTACTAACCGCTAAATATCGTTTAATACAGATAAATTTAAGGAGTATATATGGAAATGTTACAGCTTTTTTTATATTTGACTGCGGCTTATTTAATTTTTTCTAAGCCCAAAGGAGAAAAAATAGCCTATAGGATTACATGCGTAGTCGTATTAAGTGCATTTTTTGTATTCTTTATGGCGACGAAAACAATGATTCTTCCGGGTGTTACCTATTGATTGAGTAAGGAGCAAAACATGAATGAAAAAATATTCAATGGAATACTAAGCTTATCTGCGCTTTCTATTGCAACGGTCTTGGGTGTTGCCTCTTTTTATCTGGGCTTTA  >  1/1387111‑1387591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑