| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,320,736 | A→G | G69G (GGT→GGC) | unknown ← | Outer membrane lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,320,736 | 0 | A | G | 98.6% | 174.8 / ‑6.0 | 73 | G69G (GGT→GGC) | unknown | Outer membrane lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (41/31); minor base C (0/1); total (41/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACGTGAACCGCCGACGATACGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCACCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTAAAATTATGAAGTTATTAAACC > 1/1320507‑1320976 | aaCGTGAACCGCCGACGATACGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATa > 1:395702/1‑251 (MQ=255) cgaTACGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGcc > 1:93396/1‑250 (MQ=255) aTACGTACCCGCGCACCCGGCACTAAGTTAGGTTTGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGcc > 1:807343/1‑248 (MQ=255) aTACGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGcc > 1:864158/1‑248 (MQ=255) aTACGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCG‑CAATAGTACCAATCACGCCCTgg > 1:130422/1‑251 (MQ=255) aCGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGt > 1:114182/1‑251 (MQ=255) aCGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCACTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGt > 1:452186/1‑251 (MQ=255) cGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGtt > 1:760412/1‑251 (MQ=255) cccGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAAt > 1:16673/1‑218 (MQ=255) cTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCAc > 1:29610/1‑250 (MQ=255) gTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACcggg > 1:148417/1‑250 (MQ=255) ccTTTTTGCCCTACAACAATTTCTTTCCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTCCTGCCGGTAACTGCACC‑GGCAATTGCCCCAC‑CAGCCGTTGCAAGCGCTCTCCCTGTCCCCCCACCGATTGCAGATCCGGCAATCCCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATc < 1:612769/220‑1 (MQ=255) atgtttataagagacatttttttttCCGT‑CTTTTTTTTTG‑TTTCCCATTC‑CCAGGGCGCTAACTTGGCTGATTTTTTCTTCAC‑CCTTCCTGCCGGTAACTGCCCC‑GGCATTTGCTCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTCCCCCCCCCGATTGCAGATCCGGCAATCCCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAAc < 1:206329/228‑1 (MQ=255) tttcccctaaaacaTTTCTTTTCCCTCCAT‑TTTTTTGAATTCCCATTC‑CCAGGGCCCTAATTTGGCGGCCTTTTTCTCCAC‑TCTAACTGCCGGTACCGGCCCC‑GCCATTTAC‑CCAACCACCCGTAGCAGGCGCTCTCCCTGACCCCCCCCCGATTGCAGATCCGGCAATGCCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATg < 1:429752/238‑1 (MQ=255) cTACAACATTTTTTTTTCCGT‑CTTTTTTTTTG‑ATTCCCATTC‑CCAGGGCGTTAACTTGGCTGCCTTTTTCTCCAC‑CCTTACTGCGGGTAACTGCCCC‑GGAAATTGCCCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTACCCCCACCGATTGCAGATCCGGCAATCCCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCa < 1:54046/251‑1 (MQ=255) cTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCa > 1:403346/1‑251 (MQ=255) acaacaATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATa > 1:538485/1‑251 (MQ=255) aacatTTTCTTTTCCTT‑CTTTTTTTTTG‑ATTCCCATTC‑CCAGGGCGCTAACTTGGCTGCCTTTTTCTTCAC‑CCTTACGGCCGGTACCGGCCCC‑GGCAATTGCCCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTCCCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAAc < 1:468825/251‑1 (MQ=255) aacaaTTTCTTTTCCGT‑CATTTTTTTTG‑ATTCCCATTC‑CCAAGGCGCTACCTTGGCTGCCTTTTTCTTCAC‑CCTTACTGCCGTTAACTGCCCC‑GGCAATTCCTCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTACCACCACCGATTGCAGATCCGGCAATCCCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAAc < 1:11096/251‑1 (MQ=255) acaaTTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTa > 1:810768/1‑204 (MQ=255) ttttCTTTTCCGT‑CATTTTTTTTG‑ATTCCCATTC‑CCAAGGCGCTAACTGGGCTGCTTTTTTCTTCAC‑CCTTACTGCCGGTACCTGCACC‑GGAAATTGCCCCAA‑CAGCCGTTGCAGGCGCTCTCCCTGTCCCACCACCAATTGAAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAAt < 1:37921/250‑1 (MQ=255) tttCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATa > 1:516355/1‑251 (MQ=255) tctttttcctcattattttttG‑ATTCCCATTC‑CCAAGGCACAACCTGGGCTGAC‑TTTTCCTCAACCCTTCCTGCCGGAAACTGCACC‑GGCAATTCCTCAAA‑CACCCGTTGCAAGCGCACTACCTTTACCACCACCGATCAAAGACCCGGCAATACCCCCAATTCCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAg < 1:61642/236‑1 (MQ=255) cTTTTCCTT‑CTTTTTTTTTG‑ATTACCATTG‑CCAAGGCGCTAACTTGGCTGACTTTTTCTCCAC‑CCTTCTTGCCGGTAACTGCCCC‑GGAAATTGCTCCAA‑CAGCCGTTGAAAGCGCTCTACCTGTACCACCCCCGATTGCAGATCCGGCAATCCCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGaa < 1:676049/251‑1 (MQ=255) cTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACGGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAAc > 1:495610/1‑229 (MQ=255) ttttcccttctttttttttA‑ATT‑CCATTTCCCAGGGCGCTAACTTGGCTGCCTTTTTC‑TCAACCCTTCCTGCCGGTAACTGCACC‑GGCATTTGCTCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTACCCCCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGaa < 1:843098/238‑1 (MQ=255) tCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAAcgcg > 1:233844/1‑251 (MQ=255) tCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAAc > 1:697737/1‑232 (MQ=255) cTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCtttt > 1:261418/1‑251 (MQ=255) taattcccATTT‑CCAGGCCGCAACCTTGGCTGCCTTTTTCTTCAC‑CCTTCCTGCCGGTACCTGCCCC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTCCCCCCACCGATTGCAGATCCGGCAATACCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAg < 1:893527/225‑1 (MQ=255) tACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAg > 1:550377/1‑227 (MQ=255) ccATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCt > 1:876433/1‑242 (MQ=255) ttt‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCgaagaa > 1:374867/1‑251 (MQ=255) ccagggCGCTACCTTGCCTGCCTTTTTCTTCAC‑CCTTCCTGCCGGT‑ACCGCCCCGGGCAATTGCCCAAA‑CAGCCGTTGCAAGCGCTCTCCCTGTCCCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATac < 1:9602/247‑1 (MQ=255) aaagagacaaaccTTGGCTGTCTTTTTCTTCAC‑CTTTCCTCCCGGTACCAGCACC‑GACAATTGCCCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATac < 1:303261/239‑1 (MQ=255) ctgggagatttttaaaagagacatttCTCCAA‑CCTTCCTGCCGGTAACTGCCCC‑GGCAATTGCCCCAC‑CACCCGTTGCAAGCGCTCTCCCTGTCCCCCCCCCGATTGCAGATCCGGCAATCCCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATac < 1:469203/227‑1 (MQ=255) gcgcTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATacaca > 1:778471/1‑249 (MQ=255) gcgcTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATacaca > 1:536949/1‑249 (MQ=255) gcgcTAACTGGGCTGACTTTTTCTTCAA‑CCTTCCGGCCGGTAACTGCCCC‑GGCAATTCCCCCAA‑CAGCCGTTGCAAGCGCCCTCCCTGTCCCCCCACCGATTGCAGACCCGGCAATACCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATacacac < 1:752443/250‑1 (MQ=255) a‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCt > 1:228415/1‑240 (MQ=255) acctttactgcggttaacggcccgggCATTTGCCCCAC‑CAGCCGTGGCAAGCGCTCTCCCTGTACCCCCACCAATTGCAGATCGGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGcac < 1:35780/227‑1 (MQ=255) ccTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGaaa > 1:424696/1‑165 (MQ=255) gCCGGTAACTGCCCC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTCCCCCCCCCGATTGCAGATCCGGCAATCCCGCCAATTGCACCACCGCCAATAGTACCAATCACGccc < 1:569923/121‑1 (MQ=255) gCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCaa > 1:863107/1‑251 (MQ=255) cTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATacac > 1:492672/1‑205 (MQ=255) gccccggcattgccTCCAC‑CAGCCGTTGCAAGCGCTCTACCTGTCCCCCCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACa < 1:156327/206‑1 (MQ=255) gCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTaa > 1:560823/1‑251 (MQ=255) aaattcccccAA‑CAGCCGTTGCAAGCGCTCTCCCTGTCCCCCCCCCGATTGCAGATCCGGCAATCCCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTaa < 1:54619/242‑1 (MQ=255) tttcccccaacgcccGTTGCAAGCCCTCTCCCTGTCCCCCCCCCGATTGCAGATCCGGCAATCCCGCCAATTGCACCGCCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAAc < 1:19934/238‑1 (MQ=255) ttGCCCCAA‑CAGCCGTTGCAAGCGCTCTCCCTGTCCCACCCCCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATacacac < 1:215070/195‑1 (MQ=255) tccccaaccAGCCGTTGCAAGCGCTCTCCCGGTCCCCCCCCCGATTGCATATCCGGCAATCCCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAg < 1:388156/243‑1 (MQ=255) gCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATacac > 1:695742/1‑191 (MQ=255) gCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTcc > 1:898644/1‑170 (MQ=255) ttGCAACCCCTCTCCCTGTCCCCCCCCCGATTGCAGATCCGGCAATCCCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGcc < 1:668986/226‑1 (MQ=255) cgcTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTa > 1:738897/1‑215 (MQ=255) gcTCTCCCTGTACCCCCACCGATTGCAGATCCGGCAATCCCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAAc < 1:642017/185‑1 (MQ=255) ctctCCCTGTCCCCCCACCGATGGCAGACCCGGCAATCCCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTc < 1:242313/245‑1 (MQ=255) ctctACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAACACAGCTAATACGATTTTTTTCATaaaa > 1:490150/1‑251 (MQ=255) ctACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGcac > 1:526272/1‑196 (MQ=255) ctACCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATg > 1:213436/1‑251 (MQ=255) cccTGTCCCCCCACCGTTTGCAGATCCGGAAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACta < 1:770225/174‑1 (MQ=255) aCCTGTACCCCCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGaa < 1:41793/133‑1 (MQ=255) aCCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCt > 1:455020/1‑148 (MQ=255) aCCTGTACCACCACCGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCAc > 1:514474/1‑173 (MQ=255) gtcccacccccGATTGCAGACCCGGCAATCCCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACa < 1:246644/174‑1 (MQ=255) gtcccaccaccGATTGCAGATCCGGCAATCCCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACtata < 1:545598/170‑1 (MQ=255) ccaccaccGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTaaa > 1:190934/1‑251 (MQ=255) ccaccaccGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTaaa > 1:117182/1‑251 (MQ=255) ccccccGATTGCAGATCCGCCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTAAAAt < 1:719506/247‑1 (MQ=255) cccaccGTTTGAAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTAAAAt < 1:183352/250‑1 (MQ=255) accaccGATTGCAGATCCGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTAAAAt > 1:397606/1‑251 (MQ=255) cGGCAATACCGCCAATTGCCCCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTAAAATTATGAAGTTATTAAAcc < 1:561229/251‑1 (MQ=255) cGGCAATACCGCCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTAAAATTa > 1:377091/1‑236 (MQ=255) | AACGTGAACCGCCGACGATACGTACCCGCGCACCCGGCACTAAGTTAGGTTCGGCTTTTTGCACTACAACAATTTCTTTTCCGT‑CATCTTTTTTG‑ATTACCATTT‑CCAAGGCGCTAACTTGGCTGACTTTTTCTTCAA‑CCTTACTGCCGGTAACTGCACC‑GGCAATTGCTCCAA‑CAGCCGTTGCAAGCGCTCTACCTGTACCACCACCGATTGCAGATCCGGCAATACCACCAATTGCACCACCGCCAATAGTACCAATCACGCCCTGGTTATCTGCCTGAATTTTCACCGGGCGGGTTGAAACGATGGTACCATAACTAATAGAACGCGCTTCTTTTGCTTGTCCCGAAGAATACACACTGCCACTATAAACATCTTGATTAGCACAACCGGCAACAGTTAAGCCCACTAAAACAGCTAATACGATTTTTTTCATAAAATGCTCCTTAAAATTATGAAGTTATTAAACC > 1/1320507‑1320976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |