Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,242,432	C→T	T633I (ACA→ATA)	unknown →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,242,432	0	C	T	100.0%	203.7 / NA	76	T633I (ACA→ATA)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (35/41);  total (35/41)

AAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAACAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAGCGATATGCACGGTCACGGTGGTGATACCAATAATTACCGCGCTAAAAG  >  1/1242185‑1242666                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           aaaGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGa                                                                                                                                                                                                                                         >  1:406783/1‑251 (MQ=255)    gTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGt                                                                                                                                                                                                                                      >  1:409221/1‑251 (MQ=255)     tAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGt                                                                                                                                                                                                                                      <  1:16232/250‑1 (MQ=255)         tAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCGCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGcac                                                                                                                                                                                                                                 <  1:433824/251‑1 (MQ=255)              cacTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACaa                                                                                                                                                                                                                            <  1:635991/251‑1 (MQ=255)                 tAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGcc                                                                                                                                                                                                                         <  1:327465/251‑1 (MQ=255)                         cAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGa                                                                                                                                                                                                                  <  1:214670/250‑1 (MQ=255)                               agCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAAc                                                                                                                                                                                                                    <  1:180176/242‑1 (MQ=255)                                 cAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAc                                                                                                                                                                                                          <  1:523954/250‑1 (MQ=255)                                 cAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAc                                                                                                                                                                                                          <  1:300276/250‑1 (MQ=255)                                 cAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAc                                                                                                                                                                                                          >  1:543632/1‑250 (MQ=255)                                   gTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGt                                                                                                                                                                                                                                      >  1:692448/1‑220 (MQ=255)                                    tAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAccc                                                                                                                                                                                                        <  1:512171/249‑1 (MQ=255)                                    tAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAccc                                                                                                                                                                                                        <  1:820095/249‑1 (MQ=255)                                    tAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAcc                                                                                                                                                                                                         <  1:471105/248‑1 (MQ=255)                                             gCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAAtt                                                                                                                                                                                              >  1:473360/1‑250 (MQ=255)                                                tGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCg                                                                                                                                                                                          <  1:365624/251‑1 (MQ=255)                                                          gAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATg                                                                                                                                                                                 >  1:123073/1‑250 (MQ=255)                                                                 cTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGc                                                                                                                                                                          <  1:626244/250‑1 (MQ=255)                                                                          aaCAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGa                                                                                                                                                                                                                                         <  1:647975/178‑1 (MQ=255)                                                                          aaCAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATg                                                                                                                                                                  <  1:118935/249‑1 (MQ=255)                                                                          aaCAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGt                                                                                                                                                                 <  1:428606/250‑1 (MQ=255)                                                                                        tctcACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATa                                                                                                                                                   >  1:73087/1‑250 (MQ=255)                                                                                           cACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACAtt                                                                                                                                               >  1:218787/1‑251 (MQ=255)                                                                                             cGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAAt                                                                                                                                                    >  1:776330/1‑244 (MQ=255)                                                                                             cGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTaa                                                                                                                                             >  1:866675/1‑251 (MQ=255)                                                                                             cGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTaa                                                                                                                                             >  1:292331/1‑251 (MQ=255)                                                                                               cagaaACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATg                                                                                                                                                                  <  1:573771/227‑1 (MQ=255)                                                                                                 gaaACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAAttt                                                                                                                                         >  1:807271/1‑251 (MQ=255)                                                                                                       gCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATAc                                                                                                                                                  <  1:736831/236‑1 (MQ=255)                                                                                                        cccATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAACCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATc                                                                                                                                    <  1:444071/249‑1 (MQ=255)                                                                                                          cATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATg                                                                                                                                                                  <  1:891311/217‑1 (MQ=255)                                                                                                          cATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCttt                                                                                                                                 >  1:163779/1‑250 (MQ=255)                                                                                                            tCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGa                                                                                                                                                                                                                  <  1:126154/167‑1 (MQ=255)                                                                                                                    aTGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAc                                                                                                                                                                                                          <  1:437106/167‑1 (MQ=255)                                                                                                                      gCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCggg                                                                                                                            <  1:17352/243‑1 (MQ=255)                                                                                                                              aaCCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATtc                                                                                                                                                                                             >  1:875935/1‑170 (MQ=255)                                                                                                                              aaCCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGt                                                                                                                                                                 >  1:819155/1‑198 (MQ=255)                                                                                                                              aaCCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGGAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAAt                                                                                                            >  1:475559/1‑251 (MQ=255)                                                                                                                                ccATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTa                                                                                                          >  1:11571/1‑251 (MQ=255)                                                                                                                                   tttCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGAc                                                                                                       <  1:370560/251‑1 (MQ=255)                                                                                                                                         tgGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAAc                                                                                                  <  1:880952/250‑1 (MQ=255)                                                                                                                                          ggTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCg                                                                                                                                                                                          >  1:222973/1‑161 (MQ=255)                                                                                                                                          ggTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACaa                                                                                                >  1:413362/1‑251 (MQ=255)                                                                                                                                                aCGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGttt                                                                                            >  1:96807/1‑249 (MQ=255)                                                                                                                                                             gAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATg                                                                                                                                                                  <  1:247711/166‑1 (MQ=255)                                                                                                                                                              aaaTCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCActct                                                                                <  1:851606/247‑1 (MQ=255)                                                                                                                                                               aaTCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGAc                                                                                                       >  1:652170/1‑223 (MQ=255)                                                                                                                                                                    cATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTtg                                                                              <  1:575870/243‑1 (MQ=255)                                                                                                                                                                    cATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTAAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGtt                                                                      >  1:437123/1‑251 (MQ=255)                                                                                                                                                                       cGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTgg                                                                   >  1:97618/1‑251 (MQ=255)                                                                                                                                                                       cGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTgg                                                                   >  1:352337/1‑251 (MQ=255)                                                                                                                                                                       cGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTgg                                                                   >  1:572711/1‑251 (MQ=255)                                                                                                                                                                          cAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGt                                                                 <  1:477383/250‑1 (MQ=255)                                                                                                                                                                            aTACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGcacc                                                                                                                                                                                                                                >  1:790177/1‑89 (MQ=255)                                                                                                                                                                            aTACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAcc                                                                                                                                                                                                         >  1:816169/1‑112 (MQ=255)                                                                                                                                                                            aTACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGa                                                              >  1:100694/1‑251 (MQ=255)                                                                                                                                                                            aTACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGa                                                              >  1:395975/1‑251 (MQ=255)                                                                                                                                                                                      aTCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATg                                                                                                                                                                  <  1:821366/141‑1 (MQ=255)                                                                                                                                                                                      aTCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGAt                                                                                                                                     >  1:619595/1‑170 (MQ=255)                                                                                                                                                                                      aTCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTg                                                               <  1:556794/240‑1 (MQ=255)                                                                                                                                                                                        cTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAg                                                  <  1:188876/251‑1 (MQ=255)                                                                                                                                                                                        cTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAg                                                  <  1:455498/251‑1 (MQ=255)                                                                                                                                                                                        cTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAg                                                  <  1:816184/251‑1 (MQ=255)                                                                                                                                                                                                tAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAAc                                                                                                                                                                                                          >  1:433065/1‑91 (MQ=255)                                                                                                                                                                                                 aGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCACTTAGACAGAAAATTAGACAGAACAAGTTTCTAc                                                                                        >  1:430204/1‑204 (MQ=255)                                                                                                                                                                                                     tgGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAGCGATATGcacgg                                      <  1:758756/250‑1 (MQ=255)                                                                                                                                                                                                      ggCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATg                                                                                                                                                                                 <  1:373597/110‑1 (MQ=255)                                                                                                                                                                                                      ggCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAGCGATATGcacggt                                     >  1:490295/1‑250 (MQ=255)                                                                                                                                                                                                           aCGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAGCGATATGcacggtcacg                                 <  1:551514/249‑1 (MQ=255)                                                                                                                                                                                                                              ttCGGAAGTTAGGGAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAGCGATATGCACGGTCACGGTGGTGATACCAATAATTAc             >  1:586367/1‑250 (MQ=255)                                                                                                                                                                                                                                          ggAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATTCGTTAATAGCGATATGCACGGTCACGGTGGTGATACCAATAATAACCGCGCTAAAAg  <  1:571892/249‑1 (MQ=255)                                                                                                                                                                                                                                          ggAATCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAGCGATATGCACGGTCACGGTGGTGATACCAATAATTACCGCGCTAAAAg  <  1:767363/249‑1 (MQ=255)                                                                                                                                                                                                                                             aTCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTcc                                                                                                                               >  1:762982/1‑121 (MQ=255)                                                                                                                                                                                                                                             aTCTGAGGAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAGCGATATGcacggt                                     <  1:430800/211‑1 (MQ=255)                                                                                                                                                                                                                                                    gAAATAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAAt                                                            <  1:609229/181‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           AAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAACTGAATGCTGAAGAAACCATTTCTGTGGTTAAACGTTTAACTACAGAAATCGCATCGGCAATACATGCCAATCTTGAACCTAGTGTGGCTGACGCTGAGGTTATCGCTAATTCGGAAGTTAGGGAATCTGAGGAAACAGAAGTAGCACCACAAGCCCCAACGATATATAACCCAAATGAAATTCTCGTTGCCAATGCGATCGCTTCCAATGTAGCAATCTTGAATACATTAAATTTAGATCTTTCCGGGCGCTTAGACAGAAAATTAGACAGAACAAGTTTCTACCGCACTCTTGGTGGTGTTTGGGTTGAATACGTTAATAGCGATATGCACGGTCACGGTGGTGATACCAATAATTACCGCGCTAAAAG  >  1/1242185‑1242666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑