Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,237,232 T→C N280D (AAC→GAC)  unknown ← Glutamine synthetase type I (EC 6.3.1.2)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,237,2320TC100.0% 192.7 / NA 68N280D (AAC→GAC) unknownGlutamine synthetase type I (EC 6.3.1.2)
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (28/40);  total (28/40)

CTTCAATACGAATGGCTTTAGGGCTAGTCACCGCCGGAATACGAATGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTTTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGTTGCCACTTCATGGTGGTGCGCTTCGATGACCAAACCCATTTCTTCCATTAATA  >  1/1236989‑1237471
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                               
cTTCAATACGAATGGCTTTAGGGCTAGTCACCGCCGGAATACGAATGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCtt                                                                                                                                                                                                                                          >  1:857100/1‑251 (MQ=255)
    aaTACGAATGGCTTTAGGGCTAGTCCCCGCCGGAATACGAATGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATGCCGGTGCTTCAAGGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTTTTTAATAATACCGCCGATGTAACAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAg                                                                                                                                                                                                                                      <  1:457299/251‑1 (MQ=255)
     aTACGAATGGCTTTAGGGCTAGTCACCGCCGGAATACAAATGTAAGCGGAACGGTTACTAGCGGAATAGGCAAACAATACCGGTGCTTCAAAGCCCGGTACAAAACGCTTATAAGAGTTGGTACTTGGTTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAAAAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGa                                                                                                                                                                                                                                     <  1:45795/251‑1 (MQ=255)
              gCTTTAGGGCTAGTCACCGCCGGAATACGAATGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGc                                                                                                                                                                                                                             >  1:871535/1‑250 (MQ=255)
              gCTTTAGGGCTAGTCACCGCCGGAATACGAATGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGT‑AAGGCGGTTAAGGCCTTGGCGTGGTTTATAATAACGGCGATGGAGAAAAGTGGCGTTTTGGAAAGACCGGCATATTTATTCCCCTGGAAAATA‑TTTTGTCGCCTTTGCTTAAAGACatatagtaga                                                                                                                                                                                                                          >  1:425139/1‑245 (MQ=255)
               ttttAGGGCTAGTCCCCGCCGGAATACGAATGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATCCCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAg                                                                                                                                                                                                                           <  1:741527/250‑1 (MQ=255)
                     ggCTAGTCACCGCCGGAATACGAATGGAAGCGAAACGTTTACTAGCGGAATGGGCCAACAATCCCGGTGCTTAAAAGCCCGTTACCAAACGCTTATAAGAGTTGGTATTTGGGTTGGTAAAGGCTTTTAAGGTTTGGGCGTTTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCAt                                                                                                                                                                                                                      <  1:867694/250‑1 (MQ=255)
                            ccccgccgGAATACGAATGGAAGCGGAGGGGTTACTGGCGGAATAGGCCAAAAATACCGGTGCTTCAAAGCCCGGTACAAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAGGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAAc                                                                                                                                                                                                              <  1:898549/249‑1 (MQ=255)
                            ccccgccgGAATACGAATGGAAGCGGAACGTTTACTAGCGGAATAGGCCAACAATCCCGGTGCTTCAAAGCCCGGTACCAACCGTTTATAAGATTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGTTTGGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAAc                                                                                                                                                                                                              <  1:811394/249‑1 (MQ=255)
                                    aaaTACGAATGGAAGCGGAACGTTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTGGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCa                                                                                                                                                                                                      <  1:3879/250‑1 (MQ=255)
                                      aTACGAATGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGTTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCAcc                                                                                                                                                                                                    <  1:578250/251‑1 (MQ=255)
                                           aaTGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGA‑GTAATAAAGTGCCGTTT‑GGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGc                                                                                                                                                                                                                             <  1:633154/219‑1 (MQ=255)
                                                  gCGGAACGGTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGttt                                                                                                                                                                                        >  1:158144/1‑251 (MQ=255)
                                                            tACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGc                                                                                                                                                                                                                             >  1:193072/1‑204 (MQ=255)
                                                              cTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCg                                                                                                                                                                                                            >  1:165548/1‑219 (MQ=255)
                                                                    gAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGc                                                                                                                                                                                                                        >  1:282301/1‑201 (MQ=255)
                                                                          aaaatgtttgacGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTGGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGcc                                                                                                                                                                <  1:197190/240‑1 (MQ=255)
                                                                           ccAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCg                                                                                                                                                               <  1:72924/251‑1 (MQ=255)
                                                                            caacaaTCCCGGTGCTTAAAAGCCCGGTCCCAACCTCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCTTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATc                                                                                                                                                                                             <  1:523488/220‑1 (MQ=255)
                                                                                     cggggCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCTTTTAAGGCTTTGGCGTTTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATg                                                                                                                                                     <  1:361738/247‑1 (MQ=255)
                                                                                          cTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGTTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCcac                                                                                                                                                 <  1:546364/250‑1 (MQ=255)
                                                                                           ttCAAAGCCCGGTCCCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACAt                                                                                                                                               <  1:108189/251‑1 (MQ=255)
                                                                                            tCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACAtt                                                                                                                                              >  1:140430/1‑251 (MQ=255)
                                                                                               aaGCCCGGTACAAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCTTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATtacg                                                                                                                                           <  1:393018/251‑1 (MQ=255)
                                                                                                      gtcccAAACGTTTATAAGATTTGGTACTTGGGTGGGTAAAGGCATTTAAGGTTTTGGGGTTTTTAATAATACCGCCGATGGAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGat                                                                                                                                     <  1:449548/247‑1 (MQ=255)
                                                                                                      gTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATtattaatggca                                                                                                                                    >  1:531978/1‑242 (MQ=255)
                                                                                                      gTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGata                                                                                                                                    >  1:622782/1‑251 (MQ=255)
                                                                                                              cGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTtata                                                                                                                            >  1:288959/1‑251 (MQ=255)
                                                                                                              cGCTTATAAGAGTTGGTACTTGGGTTGGAAAAGGCGTTTAAGGTTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTtata                                                                                                                            <  1:587838/251‑1 (MQ=255)
                                                                                                                cTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGc                                                                                                                                                                                    <  1:744962/193‑1 (MQ=255)
                                                                                                                        agTTGGTACTTGGGTTGGAAAGGGCGTTAAAGGTTTGGGCGTTTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGt                                                                                                                   <  1:87633/250‑1 (MQ=255)
                                                                                                                        agTTGGTACTGGGGTTGGTAAAGGCTTTTAAGGCTTGGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGt                                                                                                                   <  1:654663/250‑1 (MQ=255)
                                                                                                                             gtattggggTTGGTAAAGGCGTTTAGGGTTTTGGGGTGTTTAATAATACTGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATta                                                                                                                                             <  1:436814/213‑1 (MQ=255)
                                                                                                                             gTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATc                                                                                                                                                                                             >  1:85345/1‑171 (MQ=255)
                                                                                                                             gTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGt                                                                                                              >  1:719959/1‑250 (MQ=255)
                                                                                                                                   gggTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCa                                                                                                                                                                                                      >  1:410628/1‑156 (MQ=255)
                                                                                                                                               gCGTTTAAGGTTTTGGGGTTTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGc                                                                                            <  1:855427/250‑1 (MQ=255)
                                                                                                                                                 gTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGatatat                                                                                                                                 >  1:578290/1‑211 (MQ=255)
                                                                                                                                                 gTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAgg                                                                                             >  1:817262/1‑247 (MQ=255)
                                                                                                                                                       ggCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATAcc                                                                                                                                                                                                                   <  1:604199/123‑1 (MQ=255)
                                                                                                                                                        gCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAAttt                                                                                  >  1:472554/1‑251 (MQ=255)
                                                                                                                                                           ttGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGt                                                                               <  1:725533/251‑1 (MQ=255)
                                                                                                                                                                gtgtTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCg                                                                                                                                                               >  1:202774/1‑166 (MQ=255)
                                                                                                                                                                  gtTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAg                                                                                                                                                                                                                           >  1:393612/1‑104 (MQ=255)
                                                                                                                                                                  gtTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCatat                                                                                                                                                      <  1:892108/173‑1 (MQ=255)
                                                                                                                                                                  gtTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACAtt                                                                                                                                              >  1:555260/1‑181 (MQ=255)
                                                                                                                                                                  gtTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAg                                                                                                  <  1:321972/225‑1 (MQ=255)
                                                                                                                                                                  gtTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAAtt                                                                        >  1:898289/1‑251 (MQ=255)
                                                                                                                                                                     taataaTACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATtacgtac                                                                                                                                        >  1:859687/1‑184 (MQ=255)
                                                                                                                                                                                   aTGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGcc                                                                                                                                                   <  1:595157/159‑1 (MQ=255)
                                                                                                                                                                                   aTGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATta                                                                                                                                             <  1:268885/165‑1 (MQ=255)
                                                                                                                                                                                   aTGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAAt                                                                                    >  1:193344/1‑222 (MQ=255)
                                                                                                                                                                                   aTGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGt                                                       >  1:164940/1‑251 (MQ=255)
                                                                                                                                                                                     gTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATAtt                                                                                                                                <  1:426413/176‑1 (MQ=255)
                                                                                                                                                                                     gTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGTTg                                                     >  1:301900/1‑251 (MQ=255)
                                                                                                                                                                                        ataaAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGc                                                                                                                                                                                                                             <  1:174134/80‑1 (MQ=255)
                                                                                                                                                                                                  gTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGTTGCCACTTCAtggtg                                        >  1:167521/1‑251 (MQ=255)
                                                                                                                                                                                                   tttCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGTTGCCACTTCAtggtgg                                       <  1:591673/251‑1 (MQ=255)
                                                                                                                                                                                                             aCCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGTTGCCACTTCATGGTGGTGCGCTTCGa                             <  1:499979/251‑1 (MQ=255)
                                                                                                                                                                                                                 gCATATTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATtacgta                                                                                                                                         <  1:85352/139‑1 (MQ=255)
                                                                                                                                                                                                                   atatTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATtac                                                                                                                                            >  1:800802/1‑134 (MQ=255)
                                                                                                                                                                                                                     atTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATtacgtac                                                                                                                                        <  1:207949/136‑1 (MQ=255)
                                                                                                                                                                                                                     atTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAg                                                                                                  <  1:674029/174‑1 (MQ=255)
                                                                                                                                                                                                                     atTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGt                                                                               <  1:499958/193‑1 (MQ=255)
                                                                                                                                                                                                                     atTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAg                                                        <  1:522885/216‑1 (MQ=255)
                                                                                                                                                                                                                     atTTATCCCCTTGGAAAATATTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGTTGCCACTTCAtggt                                         >  1:373080/1‑231 (MQ=255)
                                                                                                                                                                                                                                        atTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAg                                                                                                  <  1:291596/155‑1 (MQ=255)
                                                                                                                                                                                                                                        atTTTTGCCGTCTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGTTGCCACTTCATGGTGGTGCGCTTCGATGACCAAACCCATTTCTTCCATtaata  <  1:274056/251‑1 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                               
CTTCAATACGAATGGCTTTAGGGCTAGTCACCGCCGGAATACGAATGGAAGCGGAACGGTTACTAGCGGAATAGGCCAACAATACCGGTGCTTCAAAGCCCGGTACCAAACGCTTATAAGAGTTGGTACTTGGGTTGGTAAAGGCGTTTAAGGCTTTGGCGTGTTTAATAATACCGCCGATGTAATAAAGTGCCGTTTCGGAAAGACCGGCATATTTATCCCCTTGGAAAATATTTTTGCCGTTTTTGCTTAAAGACATATTGCAGTGCATACCTGAACCGTTATCACCAGTAATCGGTTTCGGCATAAAACAAGCGGTTTTGCCGTGTTCATATGCCACATTACGTACGATATATTTATAAATCTGGGTTTCGTCTGCTTTTAAAGTGAGGCTGTTGAATTTGGTTGCAATTTCATTTTGTCCTGCAGTTGCCACTTCATGGTGGTGCGCTTCGATGACCAAACCCATTTCTTCCATTAATA  >  1/1236989‑1237471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑