Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,199,908	A→C	D43E (GAT→GAG)	unknown ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,199,908	0	A	C	100.0%	149.5 / NA	52	D43E (GAT→GAG)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (26/26);  total (26/26)

TTACCTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATTAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTGTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATATCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCCACATAGGTAAATACCAT  >  1/1199663‑1200121                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                      ttACCTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCtcttc                                                                                                                                                                                                                  <  1:362263/251‑1 (MQ=255)   aCCTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTcttctt                                                                                                                                                                                                                >  1:526310/1‑251 (MQ=255)    ccTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCttcttt                                                                                                                                                                                                               >  1:250281/1‑251 (MQ=255)         aTCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCtttt                                                                                                                                                                                                          >  1:112820/1‑251 (MQ=255)         aTCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCtttt                                                                                                                                                                                                          >  1:864991/1‑251 (MQ=255)         aTCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCtttt                                                                                                                                                                                                          >  1:325581/1‑251 (MQ=255)             aaTTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGt                                                                                                                                                                                                      >  1:476179/1‑251 (MQ=255)             aaTTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGt                                                                                                                                                                                                      >  1:866547/1‑251 (MQ=255)                 gtgCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACg                                                                                                                                                                                                  >  1:206792/1‑251 (MQ=255)                                         ggCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATa                                                                                                                                                                          >  1:868500/2‑251 (MQ=255)                                          gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATa                                                                                                                                                                          >  1:528744/1‑250 (MQ=255)                                          gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATa                                                                                                                                                                          >  1:710179/1‑250 (MQ=255)                                          gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATa                                                                                                                                                                          >  1:223834/1‑250 (MQ=255)                                                    gTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAACTACTTTCAAg                                                                                                                                                                  >  1:94386/1‑248 (MQ=255)                                                    gTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAg                                                                                                                                                                  >  1:830501/1‑248 (MQ=255)                                                           ttttCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTaa                                                                                                                                                         <  1:718659/250‑1 (MQ=255)                                                                  tACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAAt                                                                                                                                                 <  1:647923/251‑1 (MQ=255)                                                                        cTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTGAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGc                                                                                                                                                                 >  1:429968/1‑229 (MQ=255)                                                                        cTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGc                                                                                                                                                      <  1:564640/240‑1 (MQ=255)                                                                            tcatcaACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGAc                                                                                                                                       <  1:1513/251‑1 (MQ=255)                                                                                   cATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGc                                                                                                                                <  1:648568/251‑1 (MQ=255)                                                                                             ttttGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGaa                                                                                                                      <  1:23556/251‑1 (MQ=255)                                                                                              tttGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAat                                                                                                                     >  1:122299/1‑251 (MQ=255)                                                                                                tGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAatat                                                                                                                   <  1:584667/251‑1 (MQ=255)                                                                                                tGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATGTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAatat                                                                                                                   <  1:381271/251‑1 (MQ=255)                                                                                                        gAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGc                                                                                                                            <  1:192498/234‑1 (MQ=255)                                                                                                             tctcTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTAGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGTCTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCAcgcg                                                                                                                                           <  1:123706/214‑1 (MQ=255)                                                                                                                ctTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAat                                                                                                                     <  1:825230/233‑1 (MQ=255)                                                                                                                 ttttCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAAt                                                                                                  <  1:898522/251‑1 (MQ=255)                                                                                                                     cTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATg                                                                                                                                                       >  1:541802/1‑194 (MQ=255)                                                                                                                                      aaCCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAAtttt                                                                               >  1:712476/1‑249 (MQ=255)                                                                                                                                       aCCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACttt                                                                                                                                                                      >  1:865028/1‑161 (MQ=255)                                                                                                                                               tctcTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGac                                                                    <  1:779775/251‑1 (MQ=255)                                                                                                                                                  ctGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAat                                                                                                                     >  1:849545/1‑199 (MQ=255)                                                                                                                                                         ttCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGc                                                                                                                                                      <  1:172322/159‑1 (MQ=255)                                                                                                                                                           cGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGc                                                                                                                            <  1:563925/183‑1 (MQ=255)                                                                                                                                                                    tGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATTCGCAAGCTACTAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATacac                                                <  1:95386/250‑1 (MQ=255)                                                                                                                                                                          cttcttGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCgg                                                                                           >  1:533626/1‑201 (MQ=255)                                                                                                                                                                          cttcttGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAAtt                                                                                 <  1:91434/211‑1 (MQ=255)                                                                                                                                                                           ttcttGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAata                                                                                                                    <  1:851415/175‑1 (MQ=255)                                                                                                                                                                                    taataaTTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGc                                                                                                                                                                 >  1:175535/1‑121 (MQ=255)                                                                                                                                                                                          ttCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATacac                                                <  1:194416/228‑1 (MQ=255)                                                                                                                                                                                           tCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAat                                                                                                                     >  1:305204/1‑158 (MQ=255)                                                                                                                                                                                           tCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAAt                                                                                                  <  1:424277/177‑1 (MQ=255)                                                                                                                                                                                           tCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAAt                        >  1:499051/1‑251 (MQ=255)                                                                                                                                                                                           tCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAAt                        >  1:458312/1‑251 (MQ=255)                                                                                                                                                                                                  atTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCcac                 <  1:251114/251‑1 (MQ=255)                                                                                                                                                                                                          aTACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCCACATAGGTaa         <  1:880271/251‑1 (MQ=255)                                                                                                                                                                                                               ttCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCCACATAGGTAAATAc     <  1:559548/250‑1 (MQ=255)                                                                                                                                                                                                                 cttttCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCCACATAGGTAAATACCAt  <  1:278018/247‑1 (MQ=255)                                                                                                                                                                                                                           gTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATAc                                                                                                                                  >  1:533071/1‑113 (MQ=255)                                                                                                                                                                                                                                           gCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGaa                                                                                                                      <  1:692547/109‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                      TTACCTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATTAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTGTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATATCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCCACATAGGTAAATACCAT  >  1/1199663‑1200121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑