| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,146,116 | G→A | S60S (AGC→AGT) | unknown ← | Autoinducer 2 (AI‑2) ABC transporter, permease protein LsrD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,146,116 | 0 | G | A | 100.0% | 233.2 / NA | 82 | S60S (AGC→AGT) | unknown | Autoinducer 2 (AI‑2) ABC transporter, permease protein LsrD |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (35/47); total (35/47) | |||||||||||
CCGGCAAAACCGGACAGCAACAACGCACCACCGCCGAATAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCGCTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTT > 1/1145877‑1146349 | ccGGCAAAACCGGACAGCAACAACGCACCACCGCCGAATAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAAt < 1:425206/251‑1 (MQ=255) ggCAAAACCGGACAGCAACAACGCACCACCGCCGAATAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCa > 1:264096/1‑251 (MQ=255) cAGCAACAACGCACCACCGCCGAATAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACggca > 1:337733/1‑251 (MQ=255) gCAACAACGCACCACCGCCGAATAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTc < 1:154937/242‑1 (MQ=255) caacaaCGCACCACCGCCGAATAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACggc < 1:249186/247‑1 (MQ=255) aaTAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATataaat < 1:558458/251‑1 (MQ=255) tAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGCCGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGa > 1:438460/1‑242 (MQ=255) ggTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATaaaa > 1:615106/1‑251 (MQ=255) tACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAAt < 1:5018/250‑1 (MQ=255) cATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAAt > 1:643118/1‑207 (MQ=255) gCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACggc > 1:124067/1‑214 (MQ=255) ggTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTaaa > 1:121612/1‑251 (MQ=255) gTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAag > 1:648266/1‑251 (MQ=255) tGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAagc < 1:137200/251‑1 (MQ=255) tCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGAt > 1:126351/1‑187 (MQ=255) tCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGatat > 1:373757/1‑222 (MQ=255) tCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGa < 1:765476/219‑1 (MQ=255) tCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAagcag > 1:706798/1‑250 (MQ=255) accaatgtatcaaCTTTGATGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGACAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGCAATAGCACAGAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATGCCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCAc < 1:493454/239‑1 (MQ=255) ccAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGa < 1:470732/216‑1 (MQ=255) ccAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACg > 1:369887/1‑251 (MQ=255) tGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCa < 1:749410/185‑1 (MQ=255) gATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCt < 1:663520/226‑1 (MQ=255) ttGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCAt < 1:29120/251‑1 (MQ=255) ggTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAagc < 1:402179/229‑1 (MQ=255) ggTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATa > 1:99259/1‑250 (MQ=255) ggTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATa > 1:100015/1‑250 (MQ=255) tgtAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATAcg < 1:524909/250‑1 (MQ=255) gtAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCa < 1:784886/170‑1 (MQ=255) gaATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAAt > 1:82685/1‑234 (MQ=255) gCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGaa > 1:183435/1‑251 (MQ=255) aTTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGAAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAAc < 1:517529/251‑1 (MQ=255) aaTCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCAc > 1:242683/1‑210 (MQ=255) aaaCCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAAt < 1:831118/251‑1 (MQ=255) ccGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAAttt > 1:236358/1‑250 (MQ=255) gCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAAt < 1:230740/179‑1 (MQ=255) gCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCaa > 1:250182/1‑251 (MQ=255) taataTGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga < 1:352126/251‑1 (MQ=255) caaAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAAt < 1:542953/251‑1 (MQ=255) aaaaaGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAAt < 1:645697/250‑1 (MQ=255) aaggTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATATCACATAAGCCGACGTTGGAGCCGAAAGACATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGTCCAGCATACCGATATAAATTAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga < 1:426627/232‑1 (MQ=255) aaGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATaa > 1:357176/1‑250 (MQ=255) ttAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAGCACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGt < 1:4516/250‑1 (MQ=255) ttAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGt < 1:825952/250‑1 (MQ=255) tAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCa < 1:306332/251‑1 (MQ=255) cGCCAATATCAACGGCACATCGGCTTTAAACGACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGc < 1:100887/251‑1 (MQ=255) atCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCt < 1:841395/251‑1 (MQ=255) gCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCaa > 1:341088/1‑204 (MQ=255) cacaTCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAAc < 1:899369/250‑1 (MQ=255) gCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACAt > 1:110446/1‑251 (MQ=255) aaaCAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAatta < 1:427488/251‑1 (MQ=255) caacaCACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAatta > 1:108899/1‑248 (MQ=255) caacaCACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTc < 1:351511/251‑1 (MQ=255) acacacCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAg > 1:586640/1‑200 (MQ=255) acacacCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTccc < 1:47626/251‑1 (MQ=255) cacCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTc < 1:882627/246‑1 (MQ=255) cacCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCcctc > 1:541471/1‑250 (MQ=255) cccAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACg < 1:469380/79‑1 (MQ=255) cccAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAAt > 1:350727/1‑139 (MQ=255) cccAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga < 1:555657/184‑1 (MQ=255) cccAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCtt > 1:201150/1‑251 (MQ=255) aGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAatta < 1:389038/237‑1 (MQ=255) aGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTccc < 1:92290/242‑1 (MQ=255) aGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑ttt > 1:158219/1‑251 (MQ=255) ggTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga < 1:106730/179‑1 (MQ=255) gTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATcc < 1:20001/135‑1 (MQ=255) gCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCa < 1:810579/58‑1 (MQ=255) gCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTTAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTc < 1:426495/232‑1 (MQ=255) cacaTAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCa < 1:385745/213‑1 (MQ=255) cacaTAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTTCGACCGCa > 1:80881/1‑251 (MQ=255) cacaTAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCa > 1:861889/1‑250 (MQ=255) acaTAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGaa > 1:611542/1‑161 (MQ=255) aaGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTta < 1:78956/251‑1 (MQ=255) aaGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATACAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTta < 1:453803/251‑1 (MQ=255) gTGGAGCCGAAGGAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAatga > 1:620133/1‑157 (MQ=255) gAAGGAAATATCCATGCCGCCACTGACGATAATCAAGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTa < 1:289013/101‑1 (MQ=255) ggAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTatat > 1:804118/1‑234 (MQ=255) gAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTAtttt > 1:344369/1‑251 (MQ=255) gAAATATCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTAttt < 1:87013/250‑1 (MQ=255) atatCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGc > 1:853258/1‑242 (MQ=255) tatCCATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCaa < 1:662190/138‑1 (MQ=255) ccATGCCGCCACTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGTTTCTGTCAATCAGCACGt < 1:426570/87‑1 (MQ=255) | CCGGCAAAACCGGACAGCAACAACGCACCACCGCCGAATAGGTACATAGTGCCTAAGGTGATCACCAATGGATTCACTTTGGTGTAGAGAATCAATCCGGCATTAATCAAACCGCATAATATGCCAGCAACAAAAGTTAACGGAATCGCCAATATCAACGGCACATCGGCTTTAAACAACACACCCAAGGTAATAGCACATAAGCCGACGGTGGAGCCGAAGGAAATATCCATGCCGCCGCTGACGATAATCATGGTCAACGGCAAGGCAAGCATACCGATATAAATAAAATCGCTGGTGCTGTAAAGCAGCACGTTTAAATCCAGCATACGCGGATTGAAAGCGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTA‑TTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTT > 1/1145877‑1146349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |