Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,141,352 G→A G96G (GGC→GGT)  unknown ← Minor pilin of type IV secretion complex, VirB5

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,141,3520GA100.0% 223.0 / NA 82G96G (GGC→GGT) unknownMinor pilin of type IV secretion complex, VirB5
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (40/42);  total (40/42)

CGATTAGCTAACTTATCAATTGCTTTAAGTTTGCTATTGACATTACTTTCAAACGAATCTAAGAAGCTCATACTTTCCACGGTGGAAACAATATTTGCTTCACAGGAAGTAATTTCACCTTGACGTAAATTCTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTAGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAGCCATTTATTTCACCATACAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCTGTCTGTGAGGCTAATTGGTCGGCATACGCTTTCAGCTCATTTTTATAATGCGAAACTGTATCCGTCCACTGTTTAGCCTCTTTTGCCCATTGTTGCACCGTTTGAAGCATGCTCATTTGACGTTGACCGGCAGCTGCGGCATCAACAACCGGAATACCGCTGGCTTGTACCAATACCGGC  >  1/1141110‑1141595
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                   
cgtttagcgagtttATCAATAGTTTTCAATTTACTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCatttat                                                                                                                                                                                                                                             >  1:673838/13‑251 (MQ=255)
       cgagtttATCAATAGTTTTCAATTTACTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCAcc                                                                                                                                                                                                                                       <  1:690135/245‑1 (MQ=255)
              atcaatagttttcaatttacTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAGATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               <  1:812671/232‑1 (MQ=255)
              atcaatagttttcaatttacTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               <  1:299863/232‑1 (MQ=255)
              atcaatagttttcaatttacTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTGGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               <  1:426661/232‑1 (MQ=255)
                caatagttttcaatttacTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTa                                                                                                                                                                                                                             <  1:329674/234‑1 (MQ=255)
                caatagttttcaatttacTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTa                                                                                                                                                                                                                             <  1:850073/234‑1 (MQ=255)
                   tagttttcaatttacTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATgc                                                                                                                                                                                                                          <  1:757994/237‑1 (MQ=255)
                     gttttcaatttacTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATgcg                                                                                                                                                                                                                         >  1:719511/13‑250 (MQ=255)
                         tcaatttacTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCAc                                                                                                                                                                                                                                        <  1:96845/223‑1 (MQ=255)
                                acTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               >  1:675182/2‑233 (MQ=255)
                                 cTATTGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCatttat                                                                                                                                                                                                                                             <  1:211021/218‑1 (MQ=255)
                                    ttGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCATCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGc                                                                                                                                                                                                         <  1:441807/251‑1 (MQ=255)
                                     tGACGTTACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCt                                                                                                                                                                                                        <  1:600379/251‑1 (MQ=255)
                                        cgttACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATgc                                                                                                                                                                                                                          >  1:487590/3‑230 (MQ=255)
                                          ttACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTAc                                                                                                                                                                                                   <  1:548180/251‑1 (MQ=255)
                                          ttACTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTAc                                                                                                                                                                                                   <  1:412725/251‑1 (MQ=255)
                                             cTTTCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTc                                                                                                                                                                                                                                          <  1:263973/209‑1 (MQ=255)
                                               ttCAAACGAATCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCAc                                                                                                                                                                                              <  1:317149/251‑1 (MQ=255)
                                                       aaTCTAAGAAGCTCATACTCTCCACGGTGGAAACTATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACt                                                                                                                                                                                                                              >  1:357477/1‑211 (MQ=255)
                                                       aaTCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATat                                                                                                                                                                                                                                   <  1:254252/206‑2 (MQ=255)
                                                       aaTCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTa                                                                                                                                                                                                                             <  1:34871/212‑1 (MQ=255)
                                                       aaTCTAAGAAGCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTccg                                                                                                                                                                                      >  1:632917/1‑250 (MQ=255)
                                                            aagaagCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTc                                                                                                                                                                                                                                          <  1:665406/194‑1 (MQ=255)
                                                                agCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCGCCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAg                                                                                                                                                                             >  1:325610/1‑251 (MQ=255)
                                                                agCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               <  1:372749/201‑1 (MQ=255)
                                                                agCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAg                                                                                                                                                                             >  1:603477/1‑251 (MQ=255)
                                                                agCTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAg                                                                                                                                                                             >  1:306939/1‑251 (MQ=255)
                                                                 gCTCATACTCTCCACGGTGGAAACAATATTTGCTTCGCAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAgg                                                                                                                                                                            >  1:32216/1‑251 (MQ=255)
                                                                  cTCATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTAc                                                                                                                                                                                                   >  1:895558/1‑227 (MQ=255)
                                                                    cATACTCTCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTa                                                                                                                                                                         >  1:495735/1‑251 (MQ=255)
                                                                       actctCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               >  1:587004/5‑194 (MQ=255)
                                                                        ctctCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTg                                                                                                                                                                     <  1:350774/248‑1 (MQ=255)
                                                                        ctctCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTg                                                                                                                                                                     <  1:59247/248‑1 (MQ=255)
                                                                          ctCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATgcgc                                                                                                                                                                                                                        >  1:427095/2‑198 (MQ=255)
                                                                          ctCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCcggtc                                                                                                                                                                                   >  1:830797/2‑235 (MQ=255)
                                                                          ctCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGt                                                                                                                                                                   >  1:728930/2‑251 (MQ=255)
                                                                          ctCCACGGTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGt                                                                                                                                                                   >  1:724952/2‑251 (MQ=255)
                                                                                 gTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCGCCATATAAAc                                                                                                                                                                                                                               <  1:86324/184‑1 (MQ=255)
                                                                                 gTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTgg                                                                                                                                                                    >  1:816596/1‑243 (MQ=255)
                                                                                 gTGGAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATa                                                                                                                                                            >  1:854013/1‑251 (MQ=255)
                                                                                   ggAAACAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACg                                                                                                                                                          >  1:92052/1‑251 (MQ=255)
                                                                                     aaaCAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGcc                                                                                                                                                        <  1:639592/251‑2 (MQ=255)
                                                                                     aaaCAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGcc                                                                                                                                                        <  1:234735/251‑2 (MQ=255)
                                                                                     aaaCAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGc                                                                                                                                                         >  1:42943/1‑250 (MQ=255)
                                                                                     aaaCAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGc                                                                                                                                                         <  1:515667/250‑1 (MQ=255)
                                                                                        cAATATTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGccttg                                                                                                                                                     >  1:656982/1‑247 (MQ=255)
                                                                                          atatTTGCTTCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGccttgag                                                                                                                                                   <  1:358342/251‑7 (MQ=255)
                                                                                                   tCACAAGAAGTGATTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               <  1:674913/166‑1 (MQ=255)
                                                                                                            gtgaTTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATgaga                                                                                                                                 >  1:142724/4‑248 (MQ=255)
                                                                                                              gaTTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCatttattt                                                                                                                                                                                                                                           >  1:509456/2‑143 (MQ=255)
                                                                                                              gaTTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               >  1:760279/2‑155 (MQ=255)
                                                                                                              gaTTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATgagata                                                                                                                               >  1:350373/2‑246 (MQ=255)
                                                                                                              gaTTTCACCTTGACGCAAATTTTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATgagata                                                                                                                               >  1:239945/2‑246 (MQ=255)
                                                                                                                                           ggTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCAcc                                                                                                                                                                                                                  >  1:420943/1‑139 (MQ=255)
                                                                                                                                            gTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTg                                                                                                 >  1:897788/1‑251 (MQ=255)
                                                                                                                                                     gTTGTATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCATTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCActgt                                                                                         <  1:492531/250‑1 (MQ=255)
                                                                                                                                                         tATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCActgttgaac                                                                                    <  1:253734/251‑4 (MQ=255)
                                                                                                                                                         tATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCActgttgaac                                                                                    <  1:422696/251‑4 (MQ=255)
                                                                                                                                                         tATTTTTCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCActgttgaac                                                                                    <  1:808919/251‑4 (MQ=255)
                                                                                                                                                           tttttCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTGCATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCActgttgaacag                                                                                  <  1:889162/251‑6 (MQ=255)
                                                                                                                                                            ttttCAAACAGGCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCActgttgaacagt                                                                                 >  1:740101/1‑245 (MQ=255)
                                                                                                                                                                      ggCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTAc                                                                                                                                                                                                   <  1:192639/127‑1 (MQ=255)
                                                                                                                                                                      ggCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGttttgctt                                                                                                       >  1:827483/1‑214 (MQ=255)
                                                                                                                                                                       gCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATg                                                                                                                                    <  1:393345/189‑1 (MQ=255)
                                                                                                                                                                       gCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTgtaac                                                                          <  1:707896/247‑5 (MQ=255)
                                                                                                                                                                       gCTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTgtaac                                                                          <  1:85713/247‑5 (MQ=255)
                                                                                                                                                                        cTTTTGGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTgtaacata                                                                       >  1:737084/1‑242 (MQ=255)
                                                                                                                                                                            tggCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTgtaacatactgatt                                                                 <  1:889212/249‑14 (MQ=255)
                                                                                                                                                                               cATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGttt                                                                               >  1:341961/1‑234 (MQ=255)
                                                                                                                                                                                     cgcTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTgtaac                                                                          <  1:848010/233‑5 (MQ=255)
                                                                                                                                                                                     cgcTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTGTAACATACTGATTTGCCGTTGa                                                        >  1:703525/1‑251 (MQ=255)
                                                                                                                                                                                       cTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGcc                                                                                                                                                        >  1:49025/1‑152 (MQ=255)
                                                                                                                                                                                                         ccGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAAc                                                                                                                                                                                                                               <  1:800808/64‑1 (MQ=255)
                                                                                                                                                                                                               aCTAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTCGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTGTAACATACTGATTTGCCGTTGACCTGCAGCAGCACCATCAACTACCgg                              <  1:447852/251‑1 (MQ=255)
                                                                                                                                                                                                                 tAAATCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTGTAACATACTGATTTGCCGTTGACCTGCAGCAGCACCATCAACTACCGGaa                            <  1:803527/251‑1 (MQ=255)
                                                                                                                                                                                                                    aTCGATTACCGGGGTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTGTAACATACTGATTTGCCGTTGACCTGCAGCAGCACCATCAACTACCGGAATAc                         <  1:110855/251‑1 (MQ=255)
                                                                                                                                                                                                                              ggggTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGcc                                                                                                                                                        >  1:387467/1‑113 (MQ=255)
                                                                                                                                                                                                                               gggTAAACTCCGATTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTGTAACATACTGATTTGCCGTTGACCTGCAGCAGCACCATCAACTACCGGAATACCGCTAGCTTga              >  1:245680/1‑250 (MQ=255)
                                                                                                                                                                                                                                           aTTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTGTAACATACTGATTTGCCGTTGACCTGCAGCAGCACCATcaactac                                 >  1:620605/1‑217 (MQ=255)
                                                                                                                                                                                                                                           aTTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTGTAACATACTGATTTGCCGTTGACCTGCAGCAGCACCATCAACTACCGGAATACCGCTAGCTTGAACTAATGCCggt  >  1:244693/1‑250 (MQ=255)
                                                                                                                                                                                                                                           aTTTTAAACCATTTATTTCACCATATAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCGGTCTGTGAGGCTAATTGGTCGGCATACGCCTTGAGTTCGTTTTTGTAATGAGATACGGTTTCTGTCCATTGTTTTGCTTCTTTTGCCCACTGTTGAACAGTTTGTAACATACTGATTTGCCGTTGACCTGCAGCAGCACCATCAACTACCGGAATACCGCTAGCTTGAACTAATGCCggt  >  1:687568/1‑250 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                   
CGATTAGCTAACTTATCAATTGCTTTAAGTTTGCTATTGACATTACTTTCAAACGAATCTAAGAAGCTCATACTTTCCACGGTGGAAACAATATTTGCTTCACAGGAAGTAATTTCACCTTGACGTAAATTCTTACAACGGTCAAAAAGGTTGTATTTTTCAAACAGGCTTTTAGCATTCGCGCTTAATGCGTTTTTCCCACCGGAAACTAAATCGATTACCGGGGTAAACTCCGATTTTAAGCCATTTATTTCACCATACAAACTATGCGCTTCACCAATAAAGGCTTGTACATCACGAATTCCTGTCTGTGAGGCTAATTGGTCGGCATACGCTTTCAGCTCATTTTTATAATGCGAAACTGTATCCGTCCACTGTTTAGCCTCTTTTGCCCATTGTTGCACCGTTTGAAGCATGCTCATTTGACGTTGACCGGCAGCTGCGGCATCAACAACCGGAATACCGCTGGCTTGTACCAATACCGGC  >  1/1141110‑1141595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑