| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,137,886 | T→C | S277S (TCA→TCG) | unknown ← | Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,137,886 | 0 | T | C | 100.0% | 175.5 / NA | 62 | S277S (TCA→TCG) | unknown | Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (29/33); total (29/33) | |||||||||||
GAATTCTTCTTTTTCCTTAACCTGTGCCGGTTGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGTGAAATGGTCGTGTTATAAGTTACCGGTGTTTTTCCGTAACTTTGATTGTAAATGCCGACCACTTTTTCACCGCTACGTAATACCAATTTTTCTGCTGTTTTTTGGATGACTAATACCTGATAATTACCGTCTTGTTTAACATTAGTATTTAACAGACTTTCCGTGGAGCCTTCTAACAAGAAGGCTGCAGGAAAGGTTTTATTTGGGGCAAATCCAAGATAAGTAAAAATACCGTCATCATAA > 1/1137643‑1138129 | gAATTCTTCTTTTTCCTTAACCTGTGCCGGTTGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATgg > 1:627287/1‑251 (MQ=255) aaTTCTTCTTTTTCCTTAACCTGTGCCGGTTGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATgg < 1:381411/250‑1 (MQ=255) tttCCTTAACCTGTGCCGGTTGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATaa < 1:460001/251‑1 (MQ=255) ttAACCTGTGCCGGTTGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAgaaac < 1:119866/251‑5 (MQ=255) ccTGTGCCGGTTGCGTATCCTTTTTATTCAATAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAgaaaccgg > 1:73374/1‑243 (MQ=255) gtgCCGGTTGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAgaaaccggcgtt > 1:240279/1‑240 (MQ=255) ccGGTTGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGtttt < 1:867499/250‑1 (MQ=255) tGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAga > 1:629910/1‑232 (MQ=255) tGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactag > 1:535426‑M1/1‑245 (MQ=255) gCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaact > 1:581924‑M1/1‑244 (MQ=255) gTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGttt > 1:624850/1‑241 (MQ=255) aTCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaact > 1:313499‑M1/1‑240 (MQ=255) ccttttatTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaaga < 1:727216‑M1/249‑15 (MQ=255) cTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaaga < 1:722471‑M1/251‑15 (MQ=255) cTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaaga < 1:498708‑M1/251‑15 (MQ=255) ttCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaa < 1:300441‑M1/251‑22 (MQ=255) gAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTATTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTatctagttttaagatcatcaattatcgat < 1:376033‑M1/250‑30 (MQ=255) cccAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagt > 1:281989‑M1/1‑215 (MQ=255) aaaCGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatct < 1:136156‑M1/251‑42 (MQ=255) aCGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctag < 1:549450‑M1/251‑44 (MQ=255) aCGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctag < 1:215261‑M1/251‑44 (MQ=255) aCGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctag < 1:204509‑M1/251‑44 (MQ=255) cACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagatac < 1:100361‑M1/251‑48 (MQ=255) cACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagatac < 1:238080‑M1/251‑48 (MQ=255) cGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagatac > 1:142546‑M1/1‑202 (MQ=255) ggCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccc > 1:848174‑M1/1‑201 (MQ=255) ggCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTACCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatct > 1:98597‑M1/1‑201 (MQ=255) gCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagatacccc > 1:885011‑M1/1‑196 (MQ=255) cAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagag < 1:477613‑M1/230‑36 (MQ=255) gTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataat > 1:4241‑M1/1‑193 (MQ=255) gTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaatt > 1:766993‑M1/1‑193 (MQ=255) tGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattc < 1:587990‑M1/251‑60 (MQ=255) tGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattc < 1:609080‑M1/251‑60 (MQ=255) tGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataat < 1:515339‑M1/249‑58 (MQ=255) tGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataat < 1:228092‑M1/249‑58 (MQ=255) tGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTGTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataa < 1:438952‑M1/248‑57 (MQ=255) gCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattca > 1:386138‑M1/1‑191 (MQ=255) gCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagata < 1:594226‑M1/237‑47 (MQ=255) aatCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcata > 1:476571‑M1/1‑186 (MQ=255) aatCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGT‑‑TAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaa > 1:241258‑M1/1‑184 (MQ=255) aaaaTAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaatta < 1:798024‑M1/203‑25 (MQ=255) aataaataGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagatac < 1:600198‑M1/224‑48 (MQ=255) aataaataGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctag > 1:803188‑M1/1‑177 (MQ=255) aataaataGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaaga > 1:78263‑M1/1‑177 (MQ=255) taaataGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaat < 1:826185‑M1/251‑77 (MQ=255) aTTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatt < 1:523010‑M1/251‑84 (MQ=255) cgTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTATCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttt < 1:351355‑M1/237‑86 (MQ=255) aTTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattc > 1:91944‑M1/1‑143 (MQ=255) aTAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagat < 1:564690‑M1/138‑16 (MQ=255) ttGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctggagcttcaattttgccagatattacgg < 1:277751‑M1/251‑145 (MQ=255) gTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaaga > 1:279010‑M1/1‑105 (MQ=255) gTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataat > 1:879531‑M1/1‑86 (MQ=255) gTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctag < 1:892916‑M1/124‑44 (MQ=255) gTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctggagcttcaattttgccagatgttacggcaaatccttttcctaaaaagtaaattgtcagt > 1:90798‑M1/1‑75 (MQ=255) gCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatccattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctgg > 1:148022‑M1/1‑65 (MQ=255) gCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctggagcttcaattttgccagatattacggcaaatccttttcctaaaaagtaaattgtcagtgtcatgccaa > 1:37942‑M1/1‑65 (MQ=255) gCCTCCTATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctggagcttcaattttgccagatattacgg > 1:149953‑M1/1‑65 (MQ=255) cctcctATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctggagcttcaattttgccagatattacggcaaatccttttcctaaaaagtaaattgtcagtgtcatgccaat < 1:138048‑M1/251‑188 (MQ=255) ctcctATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAg < 1:82661/50‑1 (MQ=255) cctATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctggagcttcaattttgccagatattacggcaaatccttttcctaaaaagtaaattgtcagtgtcatgccaataat > 1:224522‑M1/1‑61 (MQ=255) cctATCGTTCGTCTCTTGCCACATTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctggagcttcaattttgccagatattacggcaaatccttttcctaaaaagtaaattgtcagtgtcatgccaataat < 1:54768‑M1/251‑191 (MQ=255) caTTTGGCGAAATGGTTGTGTTATAAGAAACCGGCGTTTTaactagttttaagatcatcaattatcgataaagagttatctagataccccccataattcatcataaatgccacaataatcatttttgtgacaaaatcataaattaatgctgttgctggagcttcaattttgccagatattacggcaaatccttttcctaaaaagtaaattgtcagtgtcatgccaataattgtaaaaagtgagctggcaaa > 1:710751‑M1/1‑40 (MQ=255) | GAATTCTTCTTTTTCCTTAACCTGTGCCGGTTGCGTATCCTTTTTATTCAAAAAGGAATAACCCAAAAACGCCACGGCAAGCAGTGCAATAATCAGAAAAATAAATAGATTTTGGTTTTTACCGCGTTTGGCAATTTTGCTGACTTCCGGTTGATAATCGGTTTCCGTTTTGTCATCCGTCGGCTGAATGGTTTTGTTATCGTTCATCTCTGCCTCCTATCGTTCGTCTCTTGCCACATTTGGTGAAATGGTCGTGTTATAAGTTACCGGTGTTTTTCCGTAACTTTGATTGTAAATGCCGACCACTTTTTCACCGCTACGTAATACCAATTTTTCTGCTGTTTTTTGGATGACTAATACCTGATAATTACCGTCTTGTTTAACATTAGTATTTAACAGACTTTCCGTGGAGCCTTCTAACAAGAAGGCTGCAGGAAAGGTTTTATTTGGGGCAAATCCAAGATAAGTAAAAATACCGTCATCATAA > 1/1137643‑1138129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |