| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,136,143 | T→C | L195L (CTA→CTG) | unknown ← | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,136,143 | 0 | T | C | 100.0% | 166.2 / NA | 58 | L195L (CTA→CTG) | unknown | ATPase required for both assembly of type IV secretion complex and secretion of T‑DNA complex, VirB11 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (18/40); total (18/40) | |||||||||||
ACCGAACCGGCATGACAAGAGGTAATCGACCCGTTATGCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAATTCTTATGTTGGCGTAAGAATAATTCCGGAGTATCTTCGATGGTGCCTAGGCGTTCATGCAACGGAATATAATCGACCAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTCTTCCCGCAGATAACCGCTTGTTTAAGAAATTCCGCATAATCGCCCTTATGATAAATTTCCAGTAGTGTCCGGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCGTTGTTGATGTAATAATCCAGGTCAAAAAAA > 1/1135898‑1136383 | accgaaccgGCATGACAAGAGGTAATCGACCCGTTATGCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCg < 1:297145/251‑1 (MQ=255) cAAGAGGTAATCGACCCGTTATGCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAat < 1:61451/251‑1 (MQ=255) cAAGAGGTAATCGACCCGTTATGCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAat < 1:356742/251‑1 (MQ=255) tAATCGACCCGTTATGCCCGGAAGAAACCTCATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCg < 1:642640/251‑1 (MQ=255) ccGTTATGCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGc < 1:520970/251‑1 (MQ=255) cGTTATGCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAatat < 1:415635/237‑1 (MQ=255) tGCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGAct < 1:405645/240‑2 (MQ=255) gCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCAtt > 1:119083/1‑251 (MQ=255) gaagaaACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAg < 1:263081/250‑1 (MQ=255) acaTTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAAt > 1:741558/1‑220 (MQ=255) caTTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCg > 1:323651/1‑251 (MQ=255) gATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAAt < 1:372620/215‑1 (MQ=255) gTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAggg < 1:104685/218‑1 (MQ=255) tCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTc < 1:608713/251‑1 (MQ=255) gTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCg < 1:620577/204‑1 (MQ=255) gTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTccc < 1:325609/233‑1 (MQ=255) tcgTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAatat < 1:255552/250‑1 (MQ=255) cGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATcac < 1:166111/237‑1 (MQ=255) gTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAAt > 1:205032/1‑177 (MQ=255) gTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCaaatg > 1:714019/1‑247 (MQ=255) gTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCaaatg > 1:809806/1‑247 (MQ=255) ggTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGATTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAg > 1:682227/1‑251 (MQ=255) tttCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCTCAATATTTTTCCCGCAAATGACCGCTTGTTTAAgg < 1:614619/250‑2 (MQ=255) tttCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAgga < 1:637024/251‑3 (MQ=255) tttCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAgga < 1:830234/251‑3 (MQ=255) tttCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAgg < 1:153121/250‑2 (MQ=255) cAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAAt < 1:420622/250‑1 (MQ=255) ttCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGTGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCtt < 1:437037/251‑1 (MQ=255) cAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGa < 1:806088/250‑1 (MQ=255) gCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGa < 1:437769/240‑1 (MQ=255) tGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCagtag < 1:161532/250‑1 (MQ=255) tGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCagtag < 1:467232/250‑1 (MQ=255) tGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCagtag < 1:310402/250‑1 (MQ=255) ttGCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGAc < 1:834854/251‑1 (MQ=255) gCTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATGAATTTCCAGTAGTGTCCAGTCATCATCTGACaa > 1:620303/1‑251 (MQ=255) cTTCGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACaaa < 1:63083/251‑1 (MQ=255) cGCTTGGATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTcc > 1:282654/1‑221 (MQ=255) gATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCagtag > 1:598776/1‑220 (MQ=255) gATAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCa < 1:392256/216‑1 (MQ=255) aTAGAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCg < 1:700861/251‑1 (MQ=255) gAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAAt < 1:837387/89‑1 (MQ=255) gAATAAGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGt > 1:121596/1‑249 (MQ=255) aGTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATa > 1:82622/1‑251 (MQ=255) gTGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGc < 1:479340/180‑1 (MQ=255) tGGAAATAGTTCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAggg > 1:187583/1‑91 (MQ=255) gttCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCatcatc < 1:843645/215‑1 (MQ=255) gttCTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTaa > 1:697758/2‑251 (MQ=255) cTTATGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGAt > 1:566925/1‑185 (MQ=255) aTGTTGGCGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTc < 1:92988/229‑1 (MQ=255) cGTAAGAATAATTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCgttgtt > 1:697527/1‑251 (MQ=255) aataatTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCGTTGTTGATGta < 1:880128/251‑1 (MQ=255) atTCCGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAg < 1:323454/72‑1 (MQ=255) ccGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCGTTGTTGATGTAATAATcc < 1:72941/251‑1 (MQ=255) ccGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCGTTGTTGATGTAATAATcc < 1:667406/251‑1 (MQ=255) ccGGGGTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCGTTGTTGATGTAATAATcc < 1:333253/251‑1 (MQ=255) ggggTATCTTCAATGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCGTTGTTGATGTAATAATcc < 1:222634/246‑1 (MQ=255) caaTGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCatcatc > 1:796907/3‑178 (MQ=255) caaTGGTCCCCAGGCGTTCATGCAACGGAATATAATCGACTAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTTTTCCCGCAAATGACCGCTTGTTTAAGGAATTCCGCATAATCACCCTTATGATAAATTTCCAGTAGTGTCCAGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCGTTGTTGATGTAATAATCCAGGTCaaaaaaa > 1:118863/3‑251 (MQ=255) | ACCGAACCGGCATGACAAGAGGTAATCGACCCGTTATGCCCGGAAGAAACCACATTGATAAAGTCATAAGTTTCCCCACCGCGTAATTCCGCCAGTAAAATACGATCCGGTTTCATTCGTAGGCAAGATTTCAGCAAAGAGGCAGCCGTGATTAAATCACCATTTTTTGCTTCGCTTGGATAGAATAAGTGGAAATAATTCTTATGTTGGCGTAAGAATAATTCCGGAGTATCTTCGATGGTGCCTAGGCGTTCATGCAACGGAATATAATCGACCAGGGCTTTCATTAAAGTGGTTTTCCCGGAGCCGGTTTCCCCGGCAATCACAATATTCTTCCCGCAGATAACCGCTTGTTTAAGAAATTCCGCATAATCGCCCTTATGATAAATTTCCAGTAGTGTCCGGTCATCATCTGACAAACGATTTTCCGTCTTGATAACACGACTAAAAAAGCCGTTGTTGATGTAATAATCCAGGTCAAAAAAA > 1/1135898‑1136383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |