| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,135,172 | T→C | K175K (AAA→AAG) | unknown ← | Type IV secretion system protein VirD4 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,135,172 | 0 | T | C | 100.0% | 221.9 / NA | 77 | K175K (AAA→AAG) | unknown | Type IV secretion system protein VirD4 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (47/30); total (47/30) | |||||||||||
GGCATAGGTCAGTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGTGCTCGGTCGCGCATATCAATACAATCCAATGGATTAAATCGGTGCGTGTTACGGTCAAACGGGGCAAAGCGATAGACTTTTTGCCCCAATATTTTTTGACGGTATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACGAATTGCGCACCGATAAAGCGTAAAAGTTTTTTGCCGAGCTTGCCGACGATAATGCCGTTTTCTTCTTCCATCAAGCCCATTTCCCGCGC > 1/1134926‑1135414 | ggCATAGGTCAGTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACctttt > 1:162708/1‑251 (MQ=255)ggCATAGGTCAGTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGCGCGTATTACGGTCAAACGGGGCAAAGCGATATACctttt > 1:733331/1‑251 (MQ=255) gCATAGGTCAGTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTg > 1:158817/1‑251 (MQ=255) ggTCAGTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGcccta > 1:368887/1‑249 (MQ=255) gTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAatat > 1:411677/1‑250 (MQ=255) gTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAata > 1:772374/1‑249 (MQ=255) gTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATAtt > 1:897884/1‑251 (MQ=255) gTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATAtt > 1:300752/1‑251 (MQ=255) tATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAatat < 1:858618/249‑1 (MQ=255) tATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATAttt < 1:286276/251‑1 (MQ=255) cGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTgtcga > 1:84567/1‑247 (MQ=255) gCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATAttt < 1:356409/249‑1 (MQ=255) cTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATTTAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTAc < 1:119774/250‑1 (MQ=255) gcgcATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATa > 1:796497/1‑250 (MQ=255) cgcATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACg < 1:170613/251‑1 (MQ=255) tatCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAg < 1:876069/251‑1 (MQ=255) gTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACg > 1:864890/1‑238 (MQ=255) gTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGttt > 1:779473/1‑251 (MQ=255) gTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGttt > 1:241414/1‑251 (MQ=255) gTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGttt > 1:806529/1‑251 (MQ=255) gTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGAGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATAttt > 1:157528/1‑213 (MQ=255) aaGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATg < 1:795126/251‑1 (MQ=255) cTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTcaca > 1:636583/1‑251 (MQ=255) aCAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAAc < 1:463565/251‑1 (MQ=255) aaaaGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACcac < 1:222724/251‑1 (MQ=255) aTTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGAt < 1:407013/250‑1 (MQ=255) gtgCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTc > 1:601535/1‑250 (MQ=255) gTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGaa > 1:658709/1‑251 (MQ=255) aTCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAAc > 1:489360/1‑213 (MQ=255) aTCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACaa < 1:559981/251‑1 (MQ=255) tCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTa < 1:246059/250‑1 (MQ=255) aGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTAc < 1:527708/250‑1 (MQ=255) gCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAACATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTAc > 1:454256/1‑249 (MQ=255) cGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCt < 1:664566/250‑1 (MQ=255) gATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATg < 1:353291/182‑1 (MQ=255) gATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTcac < 1:177614/190‑1 (MQ=255) gATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATg < 1:761916/210‑1 (MQ=255) gATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTcc > 1:429828/1‑250 (MQ=255) gATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTcc > 1:769445/1‑250 (MQ=255) gATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTcc > 1:646119/1‑250 (MQ=255) atatAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACg > 1:40005/1‑162 (MQ=255) atatAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCAt > 1:715876/1‑169 (MQ=255) atatAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGAt < 1:709998/199‑1 (MQ=255) tataAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCg > 1:146287/1‑251 (MQ=255) aGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATAtt > 1:63099/1‑144 (MQ=255) gCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATg < 1:630866/175‑1 (MQ=255) gCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGCGCCCGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCg > 1:16287/1‑251 (MQ=255) cgcccGGTCGCGCATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTAcc > 1:688824/5‑204 (MQ=255) cgcATATCAATACAATCCAGCGGACTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagttt < 1:392692/251‑13 (MQ=255) cATATCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATg > 1:680844/1‑127 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAAc < 1:55126/136‑1 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATGACAATCCCTACGc > 1:452677/1‑183 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATGACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttatta > 1:426273/1‑235 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATcc > 1:868365/1‑177 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTAcc > 1:888076/1‑190 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTAcc > 1:886792/1‑190 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTAc < 1:534007/189‑1 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttatta > 1:827872/1‑235 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttatta > 1:558210/1‑235 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttatta > 1:341298/1‑235 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttatta > 1:345639/1‑235 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaac < 1:791628/237‑3 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaac > 1:590676/1‑235 (MQ=255) tatCAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaac < 1:231387/237‑3 (MQ=255) cAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttattaccg > 1:674293/1‑232 (MQ=255) cAATACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGCTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttattaccg < 1:673921/251‑20 (MQ=255) aTACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTAcc < 1:663433/185‑1 (MQ=255) aTACAATCCAGCGGATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttattaccgag > 1:225216/1‑230 (MQ=255) ggATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGAt < 1:892073/126‑1 (MQ=255) gATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCt > 1:96235/1‑166 (MQ=255) gATTAAACCGGTGCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATAAAACGGAGCAGTTTATTACCGAGTTTGCCGACAATa > 1:281345/1‑251 (MQ=255) gCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAAt > 1:109102/1‑139 (MQ=255) gCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttattac < 1:90083/222‑18 (MQ=255) gCGTATTACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaac > 1:495215/1‑205 (MQ=255) gtattACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaacggagcagtttattaccg > 1:551262/4‑203 (MQ=255) tattACGGTCAAACGGGGCAAAGCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGAATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGAAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATAAAACGGAGCAGTTTATTACCGAGTTTGCCGACAATAATCCCGttttttt > 1:611429/3‑246 (MQ=255) gCGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATaaaac < 1:123490/182‑3 (MQ=255) cGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATAAAACGGAGCAGTTTATTACCGAGTTTGCCGACAATAATCCCGTTTTTTTCTTCCAATAAACCCAttttttgtac < 1:410405/251‑8 (MQ=255) cGATATACCTTTTGCCCTAATATTTTTTGTCGATATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACAAATTGCGCACCGATAAAACGGAGCAGTTTATTACCGAGTTTGCCGACAATAATCCCGTTTTTTTCTTCCAATAAACCCAttttttgta > 1:71111/1‑244 (MQ=255) | GGCATAGGTCAGTATCATATCGGTAAGGCTTTTTTGGCGCATATCCCACAGTAAAAAAGTGGTTGCTACAAAAAGATTCTGTGCCTGGTGCTGCCAAAAGTCTTTATCCGGGTCGCCGGTGAGCGGATATAAGCCCATAGCCTGATTTTTTAAATCGAGTTCGGCGCGTGCTCGGTCGCGCATATCAATACAATCCAATGGATTAAATCGGTGCGTGTTACGGTCAAACGGGGCAAAGCGATAGACTTTTTGCCCCAATATTTTTTGACGGTATTTACTGGTGATACGATAGCATTCGTTTTTAATGTCCTTCACAACCACAGATTGTTCCCATGCCAGCAAATTTGGAATAACAATCCCTACGCTTTTACCTCCCCGTGTCGGCGCTGCCAGTGAAACGAATTGCGCACCGATAAAGCGTAAAAGTTTTTTGCCGAGCTTGCCGACGATAATGCCGTTTTCTTCTTCCATCAAGCCCATTTCCCGCGC > 1/1134926‑1135414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |