| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,117,806 | C→T | intergenic (+28/+93) | unknown → / ← unknown | [NiFe] hydrogenase metallocenter assembly protein HypC/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,117,806 | 0 | C | T | 100.0% | 112.2 / NA | 43 | intergenic (+28/+93) | unknown/unknown | [NiFe] hydrogenase metallocenter assembly protein HypC/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/25); total (18/25) | |||||||||||
CCGTGGACGTGTGTGGCGTTCAACGCGACATCAATATTTCATTAATCTGCAACGACGACCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTACGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTGCAGCAGCATAAATGGAACCGAATATACCACCTGTTGCTATACCT > 1/1117564‑1118028 | ccGTGGACGTGTGTGGCGTTCAACGCGACATCAATATTTCATTAATCTGCAACGACGACCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAAt > 1:869686/1‑251 (MQ=255) atatTTCATTAATCTGCAACGACGACCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAAttt > 1:392404/1‑251 (MQ=255) ttCATTAATCTGCAACGACGACCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATac < 1:143366/251‑1 (MQ=255) ttCATTAATCTGCAACGACGACCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATac < 1:844092/251‑1 (MQ=255) cTGCAACGACGACCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACAt > 1:643766/1‑250 (MQ=255) cTGCAACGACGACCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACAt > 1:526610/1‑250 (MQ=255) cgacCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTAc < 1:876225/251‑1 (MQ=255) acCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAAttt < 1:171138/202‑1 (MQ=255) acCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAaat > 1:25166/1‑207 (MQ=255) acCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACtt > 1:375219/1‑251 (MQ=255) ccTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATgg < 1:756787/203‑1 (MQ=255) ccTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAAt < 1:376298/251‑1 (MQ=255) ccTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAAt > 1:510191/1‑251 (MQ=255) cAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGt < 1:803079/250‑1 (MQ=255) gTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATac > 1:636580/1‑205 (MQ=255) gTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGAc < 1:87456/189‑1 (MQ=255) gTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTAt > 1:42121/1‑250 (MQ=255) cGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGAc < 1:595464/184‑1 (MQ=255) ttGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTc < 1:873787/250‑1 (MQ=255) gCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAAt < 1:733168/167‑1 (MQ=255) gCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGaaa > 1:369809/1‑210 (MQ=255) tcGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCaa > 1:282705/1‑251 (MQ=255) gaagaagCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCaa > 1:658728/1‑251 (MQ=255) aacCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTAt < 1:209909/189‑1 (MQ=255) acCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATacac > 1:517407/1‑150 (MQ=255) acCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCaa < 1:741083/251‑1 (MQ=255) cccAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTAc < 1:562879/244‑1 (MQ=255) cAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTAc < 1:794979/163‑1 (MQ=255) aagCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATcc < 1:382356/250‑1 (MQ=255) gCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAaat > 1:490416/1‑115 (MQ=255) gTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATacac > 1:256361/1‑125 (MQ=255) gAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGcc > 1:341358/1‑193 (MQ=255) gAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTgcag > 1:263799/1‑251 (MQ=255) aaCATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTgcag > 1:893920/1‑250 (MQ=255) ggCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTGCAGCAGCATAAATg < 1:303138/250‑1 (MQ=255) aTTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACg < 1:177187/193‑1 (MQ=255) gggTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGaa < 1:786182/205‑1 (MQ=255) gggTAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACACCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTGCAGCAGCATAAATGGAACCGAATATACCACCTGTTGCt < 1:179818/250‑1 (MQ=255) tAGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTGCAGCAGCATAAATGGAACCGAATATACCACCTGTTGCTATAc < 1:877169/251‑1 (MQ=255) aGGTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAAttt < 1:318853/46‑1 (MQ=255) gTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTGCAGCAGCATAAATg < 1:711695/220‑1 (MQ=255) gTTGAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTGCAGCAGCATAAATGGAACCGAATATACCACCTGTTGCTATACct < 1:492367/250‑1 (MQ=255) gAGGAAAAGTGCGGTTGGTTTTTATGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTc < 1:149068/169‑1 (MQ=255) | CCGTGGACGTGTGTGGCGTTCAACGCGACATCAATATTTCATTAATCTGCAACGACGACCCCAAACTGCTCCTTGGCAAATGGGTCCTCGTCCACGTTGGCTTCGCCATGAGCATCATCGACGAAGAAGAAGCCAAACAAACCCAAGAAGCTTTGATCGCCATGAGTCAGTTGGAACATGAAGTGGGCGATTTTTTGGGGTTGAATCAGGGGTAGGTTGAGGAAAAGTGCGGTTGGTTTTTACGAATAAATTATAATTTCAAATAATAAATGGAAGACAAATTTATACACTTACATCTTCCATTACTTCAGAAATAAAAATTACGTATCATATTTTTATCTATTTCTTTTTAGAAAAGCGATCGCCAATGAACCAATACACGTACTCGCAATGATCCAAGAAAGCTTTTCATATCCATTTGCAGCAGCATAAATGGAACCGAATATACCACCTGTTGCTATACCT > 1/1117564‑1118028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |