| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,090,757 | T→C | I326T (ATA→ACA) | unknown → | Efflux transport system, outer membrane factor (OMF) lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,090,757 | 0 | T | C | 100.0% | 193.1 / NA | 68 | I326T (ATA→ACA) | unknown | Efflux transport system, outer membrane factor (OMF) lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (14/54); total (14/54) | |||||||||||
GTAACGAACGCACCATTGCTATTCTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAATAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGCCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAAC > 1/1090514‑1091000 | gTAACGAACGCGCCATTGCTATTCTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGgcg > 1:23721/1‑250 (MQ=255) tAACGAACGCGCCATTGCTATTCTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGgcgc < 1:3405/250‑1 (MQ=255) cgcgccATTGCTATTCTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACAt < 1:312897/247‑1 (MQ=255) cgccATTGCTATTCTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCa > 1:760880/3‑251 (MQ=255) ccATTGCTATTCTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAac < 1:743546/251‑1 (MQ=255) ttGCTATTCTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACg > 1:583665/1‑251 (MQ=255) ttttCTTAGCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACa < 1:188483/249‑1 (MQ=255) cTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTcc < 1:107917/251‑1 (MQ=255) cTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTcc < 1:898426/251‑1 (MQ=255) cGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAggg > 1:866646/1‑220 (MQ=255) aCCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTGTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAg < 1:850520/251‑1 (MQ=255) ttCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTTTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTGCGCACTTATCGCGCCCAAGTACAATCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGAATTATACCCGCGCTTTTAGATGCAATTTTTAGGACAAACAGGGCGCTTTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAAttt < 1:85498/251‑1 (MQ=255) tCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATttgttg < 1:676645/250‑1 (MQ=255) tCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATttgttg < 1:300608/250‑1 (MQ=255) ttAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGc < 1:814302/251‑1 (MQ=255) aaGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTCATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTCGAGCCTCGACa < 1:355858/251‑1 (MQ=255) gCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAg > 1:441192/1‑251 (MQ=255) gTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGcc < 1:846786/250‑1 (MQ=255) gTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGcc < 1:5505/250‑1 (MQ=255) gTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGcc < 1:150794/250‑1 (MQ=255) tctcGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGcc < 1:463043/242‑1 (MQ=255) tttACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAgg < 1:312517/201‑1 (MQ=255) aCCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCGCTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGAc < 1:251535/251‑1 (MQ=255) gccgccCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCAt > 1:835656/1‑251 (MQ=255) gccCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCa > 1:620883/1‑251 (MQ=255) cGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGTAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGcc < 1:453083/251‑1 (MQ=255) cATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCa < 1:431236/250‑1 (MQ=255) ggTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAgg < 1:647563/182‑1 (MQ=255) gtgtAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAgg < 1:262978/181‑1 (MQ=255) gtgtAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACAtt > 1:92015/1‑251 (MQ=255) gtgtAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATGTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATGGACATCAACACGGACATTCCCGATTGAAAAGGTTGGGGCAAGTGGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGcc < 1:824402/245‑1 (MQ=255) aTGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGcc < 1:248218/208‑1 (MQ=255) aTGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGAtt > 1:159266/1‑159 (MQ=255) gTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCCAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGAcg > 1:705274/1‑238 (MQ=255) gTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTGTACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGcc < 1:746478/196‑1 (MQ=255) gTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGAcgcccg > 1:780416/1‑251 (MQ=255) cgccgcCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGc < 1:35007/251‑1 (MQ=255) aTTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACtt < 1:885243/251‑1 (MQ=255) tttACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGcc < 1:134842/176‑1 (MQ=255) tttACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTc < 1:894246/251‑1 (MQ=255) tttACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTc < 1:337074/251‑1 (MQ=255) cACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGTGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATAc < 1:390029/250‑1 (MQ=255) cACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAgg < 1:628553/138‑1 (MQ=255) cACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATAc < 1:481401/250‑1 (MQ=255) cACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATAc < 1:136240/250‑1 (MQ=255) tATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAGCACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCTCGCCTGAAAGc < 1:788556/230‑1 (MQ=255) tATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGAcgcc < 1:215728/219‑1 (MQ=255) cgcgCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAgg < 1:523498/251‑1 (MQ=255) cccAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTtg > 1:191555/1‑251 (MQ=255) gTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGcc < 1:843892/154‑1 (MQ=255) gTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCa > 1:296462/1‑251 (MQ=255) aaGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGGCAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTGGCCATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAgtc < 1:81348/251‑3 (MQ=255) aaGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAGGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAgtc < 1:397172/251‑3 (MQ=255) aaGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAgtc < 1:320018/251‑3 (MQ=255) aaaCTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTccc < 1:674401/93‑1 (MQ=255) aCTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATa < 1:372997/251‑1 (MQ=255) cTTCTGCCAAAGCGGATTTATCCCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCATTTTGTTGAGCCTCGACATTGGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGTAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAg < 1:370364/250‑1 (MQ=255) cTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAg < 1:811764/250‑1 (MQ=255) cTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAg < 1:160731/250‑1 (MQ=255) ccAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCa < 1:176992/250‑1 (MQ=255) aTTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGTTTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGc < 1:115444/250‑1 (MQ=255) aTTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAAc < 1:298790/233‑1 (MQ=255) ataCCCGCGCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCAt > 1:370634/1‑251 (MQ=255) cgcgCTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAAt < 1:584252/251‑1 (MQ=255) cgcTTTGAGATTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAAt < 1:263495/249‑1 (MQ=255) agaTTCAATTTTTAGGACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGcc < 1:811542/128‑1 (MQ=255) gACAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAAc < 1:174529/250‑1 (MQ=255) cAAACAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAgtc < 1:484717/180‑3 (MQ=255) | GTAACGAACGCACCATTGCTATTCTTATCGGCAAACCGCCGCAAGACTTCCGTCTTAACAAAAGTGCGGTGGATTTTCTCGGTGTTTTACCAGCCGCCCCGCATGGTGTAATGCCCGGCAATGTATTGGAACGCCGCCCCGATTTACGCACTTATCGCGCCCAAGTACAAGCGCTGGCGGCAAAACTGGCTTCTGCCAAAGCGGATTTATACCCGCGCTTTGAGATTCAATTTTTAGGACAAATAGGGCGCATTGACATCAACACGGACATTCCCGATTTAAAAGGTTGGGGCAATTTGTTGAGCCTCGACATTAGCCTGCCGATTTTCACTAACGGACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGCCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAAC > 1/1090514‑1091000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |