| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,077,473 | C→T | Q90Q (CAG→CAA) | unknown ← | DNA topoisomerase I (EC 5.99.1.2) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,077,473 | 0 | C | T | 98.2% | 144.5 / ‑5.0 | 56 | Q90Q (CAG→CAA) | unknown | DNA topoisomerase I (EC 5.99.1.2) |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (19/36); total (19/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTGTGCGTTAACGCGATCCATATTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATCTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTGTTTCCTAAATATTTATTAATGGTTTT > 1/1077229‑1077700 | gCTGTGCGTTAACGCGATCCATATTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGAGGAGAATTTGATAg > 1:662273/1‑251 (MQ=255) cTGTGCGTTAACGCGATCCATATTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAg < 1:824490/250‑1 (MQ=255) gCGTTAACGCGATCCATATTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAg < 1:250537/246‑1 (MQ=255) ccATATTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGa > 1:220589/1‑251 (MQ=255) atatTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCttt > 1:676535/1‑239 (MQ=255) atatTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATa < 1:832304/251‑1 (MQ=255) tatTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCAC‑‑‑GCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAggg < 1:335938/251‑1 (MQ=255) ttCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTCTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGc < 1:807633/251‑1 (MQ=255) gtgtTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAgggg > 1:492993/1‑238 (MQ=255) gtgtTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATg < 1:657233/250‑1 (MQ=255) tgtTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGTGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGc < 1:596429/250‑1 (MQ=255) tgtTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCg < 1:488718/251‑1 (MQ=255) gtTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAAc < 1:185186/225‑1 (MQ=255) ggCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGt < 1:230284/230‑1 (MQ=255) gCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACt < 1:110686/249‑1 (MQ=255) gTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAg > 1:728997/1‑249 (MQ=255) gTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAg > 1:692413/1‑249 (MQ=255) tttttGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCttt < 1:783441/251‑1 (MQ=255) cATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTcc > 1:346437/1‑230 (MQ=255) cATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTAt > 1:449772/1‑250 (MQ=255) aTTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCg < 1:171046/251‑1 (MQ=255) aaaCACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGc > 1:115192/1‑249 (MQ=255) cccacGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGttt < 1:287046/250‑1 (MQ=255) cacGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGttttt < 1:461826/251‑1 (MQ=255) cgGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTttcttc < 1:116301/251‑1 (MQ=255) gCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGc < 1:730889/191‑1 (MQ=255) ataACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCAc < 1:17123/251‑1 (MQ=255) catcGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTtg < 1:392274/251‑1 (MQ=255) gccgATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGaaa > 1:232874/1‑251 (MQ=255) cgATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTGTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAAtg < 1:425916/251‑1 (MQ=255) aCTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTtggtgg < 1:316974/241‑1 (MQ=255) cTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAAtggctttg > 1:319964/1‑251 (MQ=255) gCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATGAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTgg < 1:327785/250‑1 (MQ=255) cGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACtg > 1:787568/1‑124 (MQ=255) ctcCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTtggtgg < 1:59895/213‑1 (MQ=255) ctcCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACg > 1:899382/1‑251 (MQ=255) ctcCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACg > 1:182503/1‑251 (MQ=255) ctcCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAA‑CACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACgg < 1:1002/251‑1 (MQ=255) tctcTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCg < 1:397361/137‑1 (MQ=255) tctcTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCttttt < 1:495855/163‑1 (MQ=255) tctcTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAAt < 1:254852/212‑1 (MQ=255) aTCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAAt > 1:474805/1‑251 (MQ=255) aTCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAAt > 1:117410/1‑251 (MQ=255) gTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATCTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAatat < 1:613820/250‑1 (MQ=255) ggTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGc > 1:900640/1‑245 (MQ=255) ggTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACg > 1:47480/1‑251 (MQ=255) tAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGc < 1:204251/250‑1 (MQ=255) tAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGc < 1:584885/250‑1 (MQ=255) agagaTTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAA‑CCACGGTTGGCAAATCGCGAATATGCCCCAc < 1:237719/223‑1 (MQ=255) agaTTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTg < 1:689833/244‑1 (MQ=255) agaTTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTGTTTcc < 1:621427/249‑1 (MQ=255) ttCGGCAACCCCTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTGTTTCCTAAAtattta < 1:391303/250‑1 (MQ=255) tCGGCAACCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTGTTTCCTAAAtatttatt < 1:328043/251‑1 (MQ=255) aaCCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTGTTTCCTAAATATTTATTAATgg < 1:27042/251‑1 (MQ=255) aaCCACTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTGTTTCCTAAATATTTATTAATgg < 1:551258/251‑1 (MQ=255) cTTTTTCTTTGCCGGGGAGAATTTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTGTTTCCTAAATATTTATTAATGGtttt > 1:337419/1‑250 (MQ=255) | GCTGTGCGTTAACGCGATCCATATTCAAATGTTCGGGGTGTTCAAAGGCTTGTTTAATGGCGTTTTTGGTAATTTCATTAAACACCACGCGGCTATAACGTTCATCATCGCCGCCGATGACTTCACGCAAATGCCAGGCAATCGCCTCTCCTTCTCTATCCAAATCGGTGGCGAGGTAAATATGATCAACTTTTTTTGCGAGAGATTTCAGTTCGGCAACCACTTTTTCTTTGCCGGGGAGAATCTGATAGTTGGCTTTCCAACTGTGATAAGGGTCAATGCCCATGCGTTTGACTAAAGCTTCCTGTTCTTTTTTGTGTTTTATCGCCTGTTTTTCTTCCGCACTGAGCCCTTTGGTGGAAATGGCTTTGGCTTTTTCTCCAGTGGAGGAACCCACGGTTGGCAAATCGCGAATATGCCCCACGCTGGATTTCACTACATAATTGTTTCCTAAATATTTATTAATGGTTTT > 1/1077229‑1077700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |