| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 914,470 | A→C | Y4D (TAT→GAT) | unknown ← | Integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 914,470 | 0 | A | C | 100.0% | 244.1 / NA | 89 | Y4D (TAT→GAT) | unknown | Integrase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (38/51); total (38/51) | |||||||||||
ACCGGCAGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATAGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACAGAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGAAATGCGGAAATATTATTCCCACTCAATCGTTGC > 1/914228‑914705 | aCCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCa < 1:878519/251‑1 (MQ=255) gagaAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTttat < 1:113415/250‑1 (MQ=255) tCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTttatta < 1:230903/241‑1 (MQ=255) aCTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:106978/251‑1 (MQ=255) aCTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:759636/251‑1 (MQ=255) aCTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:579316/251‑1 (MQ=255) gACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCg > 1:60686/1‑251 (MQ=255) ccTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATtat < 1:97738/244‑1 (MQ=255) gCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGaa > 1:651743/1‑251 (MQ=255) tCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:108181/240‑1 (MQ=255) tCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAg > 1:386173/1‑251 (MQ=255) tCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAg < 1:312515/251‑1 (MQ=255) cATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTAtt > 1:367128/1‑251 (MQ=255) aaTTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTg < 1:415774/251‑1 (MQ=255) cTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATtat < 1:877541/211‑1 (MQ=255) cTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:63664/213‑1 (MQ=255) cTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGAtt > 1:541418/1‑251 (MQ=255) cTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGAt < 1:210051/250‑1 (MQ=255) tCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATtgt > 1:123589/1‑251 (MQ=255) gCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGtt > 1:893433/1‑251 (MQ=255) gaTTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc > 1:884787/1‑204 (MQ=255) gaTTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCaa > 1:314707/1‑251 (MQ=255) aTTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCaa < 1:239181/250‑1 (MQ=255) aTTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCaa < 1:737458/250‑1 (MQ=255) ttATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATac < 1:586373/251‑1 (MQ=255) ttCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATacaca > 1:48885/1‑251 (MQ=255) ccGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAAt < 1:819124/251‑1 (MQ=255) gTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTttatta < 1:873648/173‑1 (MQ=255) gTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:368264/185‑1 (MQ=255) gTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:771939/185‑1 (MQ=255) gTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGAt > 1:126131/1‑222 (MQ=255) gTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATaa > 1:566656/1‑251 (MQ=255) ccGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATa > 1:677486/1‑251 (MQ=255) tAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATacac > 1:684424/1‑226 (MQ=255) tAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATaaaaa > 1:711815/1‑251 (MQ=255) aGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGA‑ACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATg > 1:690479/1‑251 (MQ=255) aTGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCaa < 1:671804/215‑1 (MQ=255) tGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:834709/167‑1 (MQ=255) gATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTttatta > 1:530028/1‑137 (MQ=255) aTTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGaaa > 1:348179/1‑250 (MQ=255) aTTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAAc < 1:866294/251‑1 (MQ=255) cTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:255045/145‑1 (MQ=255) gTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAg < 1:152156/151‑1 (MQ=255) gTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCaa > 1:32497/1‑187 (MQ=255) tAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCgg < 1:403746/153‑1 (MQ=255) cGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATac < 1:598977/183‑1 (MQ=255) gAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc > 1:110245/1‑131 (MQ=255) gAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACaaaa > 1:458527/1‑251 (MQ=255) gAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTATGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACaaaa > 1:445100/1‑251 (MQ=255) gtgATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAAccc > 1:848490/1‑250 (MQ=255) gTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGAc > 1:312119/1‑248 (MQ=255) gTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACata > 1:882325/1‑249 (MQ=255) tCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:488799/120‑1 (MQ=255) tCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACACCGACat < 1:301516/249‑2 (MQ=255) ccTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACatagag < 1:86361/251‑1 (MQ=255) cTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAgg < 1:521015/251‑1 (MQ=255) cTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAgg < 1:567246/251‑1 (MQ=255) gACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTa > 1:141019/1‑126 (MQ=255) gACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATAc < 1:468338/192‑1 (MQ=255) gACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAAc < 1:455610/210‑1 (MQ=255) gACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAAcccc < 1:729126/231‑1 (MQ=255) gACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATaa > 1:632161/1‑251 (MQ=255) aCTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAAc < 1:485276/251‑1 (MQ=255) aCTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAAc < 1:700471/251‑1 (MQ=255) cTGATTCATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAgg < 1:713484/239‑1 (MQ=255) gATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATAc > 1:165059/1‑188 (MQ=255) aTACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTAtt > 1:775076/1‑251 (MQ=255) aCATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGa < 1:421774/190‑1 (MQ=255) cATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATAc < 1:539925/99‑1 (MQ=255) cATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAGTAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTg > 1:447236/1‑251 (MQ=255) cATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTg > 1:876352/1‑251 (MQ=255) cATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGAATTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAAt > 1:93961/1‑192 (MQ=255) gTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAAc < 1:576753/245‑1 (MQ=255) aTCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGaaa < 1:243842/175‑1 (MQ=255) cGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGa < 1:739579/251‑1 (MQ=255) cGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGa < 1:115321/251‑1 (MQ=255) cGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGa < 1:303613/251‑1 (MQ=255) aCTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGAtt < 1:121858/114‑1 (MQ=255) aCTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGAt > 1:403280/1‑113 (MQ=255) aCTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATaaaaa < 1:791556/153‑1 (MQ=255) aCTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGa > 1:234778/1‑176 (MQ=255) aCTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAAc > 1:36541/1‑221 (MQ=255) aCTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGa > 1:562477/1‑229 (MQ=255) aCTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGaaa > 1:498134/1‑251 (MQ=255) ttATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGaaa < 1:326175/248‑1 (MQ=255) ggTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATACCAAAACCCCGACATAGAGGGGCTTTATAAc > 1:424117/1‑200 (MQ=255) gTTTTAGTGATTTGATTTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGAAATGCGGAAATATTATTcc < 1:894574/246‑1 (MQ=255) tgatttgattTTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGAAATGCGGAAATATTATTCCCACTCAATCg < 1:263553/249‑1 (MQ=255) atttgatttTTGAATCGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACATAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGAAATGCGGAAATATTATTCCCACTCAATCGTTGc < 1:279054/251‑1 (MQ=255) | ACCGGCAGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGC‑GGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATAGGTGAGCATTTTTATTACGTCCATTATACCGTCTGAAAAGTGTCGGTATTTTTGATCTTTTTGGATTGTGTTTCAATACACACCGTCAAAAATAACGCAATAAAAATGAAATACTATGAAATGGTATGAAACGCCATGAAATAACAAAACCCCGACAGAGAGGGGCTTTATAACTATTTTGAAACGTCATGAAATGTTATGAAATGCGGAAATATTATTCCCACTCAATCGTTGC > 1/914228‑914705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |