| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 914,234 | A→G | P82P (CCT→CCC) | unknown ← | Integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 914,234 | 0 | A | G | 100.0% | 167.0 / NA | 61 | P82P (CCT→CCC) | unknown | Integrase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (30/31); total (30/31) | |||||||||||
AAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCGTAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCAGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATAGGTGAGCA > 1/913992‑914478 | aaaaTGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGCATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGaaaa > 1:41647/1‑250 (MQ=255) aaaTGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATg < 1:727993/251‑1 (MQ=255) tGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCt < 1:394821/251‑1 (MQ=255) ggAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGa > 1:390824/1‑251 (MQ=255) aGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCCCTGAc > 1:689406/1‑249 (MQ=255) cACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTc < 1:34005/251‑1 (MQ=255) aTCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGGGAAATGCCTTCACCGACCTGCTTTCtttct > 1:460723/1‑247 (MQ=255) aTCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCtttcgg > 1:116833/1‑247 (MQ=255) aTTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTcc > 1:478846/1‑238 (MQ=255) tATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAAtttt > 1:801969/1‑251 (MQ=255) ttGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAAAGCCTTCCCTGACCTGCTTCCTTGTGAATATTAAtttttt > 1:396583/1‑250 (MQ=255) gATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCg < 1:620379/250‑1 (MQ=255) ccGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTAtt < 1:856667/251‑1 (MQ=255) gTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATg < 1:238452/189‑1 (MQ=255) tGATTTCGGACATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTc < 1:509733/250‑1 (MQ=255) gTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTa > 1:538499/1‑251 (MQ=255) tCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGcc < 1:57942/166‑1 (MQ=255) tCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTTCCGATAGtt > 1:492969/1‑251 (MQ=255) cTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTTCTTTCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGGATTTACCGATAg > 1:65576/1‑237 (MQ=255) ttAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCgaga < 1:137041/204‑1 (MQ=255) ttAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGAt < 1:779187/233‑1 (MQ=255) ttAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGGATTTACCGATAGTTAATGTTTCGCGt > 1:401494/1‑249 (MQ=255) atCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCga < 1:599225/197‑1 (MQ=255) atCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGt < 1:281010/251‑1 (MQ=255) cgttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGGATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGAt > 1:701147/1‑251 (MQ=255) gttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGAtt > 1:829285/1‑251 (MQ=255) gttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGAt > 1:316508/1‑250 (MQ=255) gttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGGTTTGCGTCTACCGTTGAtt > 1:287486/1‑251 (MQ=255) gttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAAAGTCTTCACTGAACCGCTTCCTTGCGGTCATTAATTTTTCGCGCGCTTCTGCGAGAGTTATTTCGTCGGCGCCGTATTTACCGAGAGTTAATGTTTCGCGTCTACCGTTGAtt > 1:487766/1‑251 (MQ=255) catAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTAcc > 1:57835/3‑217 (MQ=255) ccACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTa < 1:824455/250‑1 (MQ=255) gAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAAttttt < 1:779332/158‑1 (MQ=255) gCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTAcc > 1:3299/1‑197 (MQ=255) ttGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTc < 1:499408/251‑1 (MQ=255) ttGTACTTTCCGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTc < 1:678043/251‑1 (MQ=255) gTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGAt > 1:266710/1‑245 (MQ=255) tCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCggg < 1:140807/251‑1 (MQ=255) cAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGt < 1:656861/192‑1 (MQ=255) gTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTc < 1:338440/236‑1 (MQ=255) ttGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTg < 1:336397/251‑1 (MQ=255) tcctcAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATAc < 1:480299/248‑1 (MQ=255) cctcAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTc > 1:660477/1‑154 (MQ=255) cAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGc < 1:759158/251‑1 (MQ=255) aGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGgaga > 1:130124/1‑80 (MQ=255) aGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTTCCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGcc > 1:536904/1‑250 (MQ=255) gTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCtt < 1:19570/99‑1 (MQ=255) tCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATc < 1:417413/251‑1 (MQ=255) gCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCg > 1:883498/1‑210 (MQ=255) aaaaGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATag < 1:617034/251‑1 (MQ=255) aaaaGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATag < 1:868578/251‑1 (MQ=255) aaaaGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCCTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATag < 1:431393/251‑1 (MQ=255) cGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCCTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGGTTCGCGGCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGGGGGACTGATACATAAAGcc > 1:321932/1‑223 (MQ=255) gATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTc > 1:521185/1‑168 (MQ=255) gATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGtttt > 1:458705/1‑250 (MQ=255) ttGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGt > 1:212875/1‑140 (MQ=255) gATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTc < 1:321739/181‑1 (MQ=255) ttAAGGTC‑TTTTGAGTTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCAACCATTAATTTTTCGCGCGTTCCTGCGAGATTTTTCCCGTCGGCGCCGTATTTACCGTTAGTTAAGGTTCCGCTTCTACCGTTAATTCTGT‑GTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGt < 1:468794/250‑1 (MQ=255) ggTCTTTTTGA‑TTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGcccctctatgtcgggg < 1:26551/218‑14 (MQ=255) cGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTc > 1:40715/1‑85 (MQ=255) gCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATag > 1:479601/1‑212 (MQ=255) aCCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATCGGTGAGCa < 1:878519/251‑1 (MQ=255) | AAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCGTAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGA‑TTACGCTTTTCACCGGCAGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATTCTGTAGTCGTAACGGAATGTGATAGTCCCTGCGGGAGTGACTGATACATAAAGCCCGTCACGATCAGCGACTTTATAGAGTTTATCTTTTGGTTTTAGTGATTTGATTTTTGAATAGGTGAGCA > 1/913992‑914478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |