| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 914,108 | G→A | Y124Y (TAC→TAT) | unknown ← | Integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 914,108 | 0 | G | A | 100.0% | 154.2 / NA | 57 | Y124Y (TAC→TAT) | unknown | Integrase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (27/30); total (27/30) | |||||||||||
CGGGGTTAGAACGCGTTCGCGCTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCGTAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCAGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATT > 1/913862‑914354 | cGGGGTTAGAACGCGTTCGCGCTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAg < 1:539611/251‑1 (MQ=255)cGGGGTTAGAACGCGTTCGCGCTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAg < 1:578886/251‑1 (MQ=255)cGGGGTTAGAACGCGTTCGCGCTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAg < 1:645151/251‑1 (MQ=255) gggTTAGAACGCGTTCGCGCTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTg > 1:697301/1‑251 (MQ=255) gggTTAGAACGCGTTCGCGCTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTg > 1:378174/1‑251 (MQ=255) tAGAACGCGTTCGCGCTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCa > 1:828198/1‑251 (MQ=255) cTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTg < 1:857433/251‑1 (MQ=255) tttGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTAc < 1:9928/251‑1 (MQ=255) tttGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTAc < 1:397955/251‑1 (MQ=255) tttGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTAc < 1:594267/251‑1 (MQ=255) ttGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGcc < 1:506311/251‑1 (MQ=255) ttGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGc > 1:75234/1‑250 (MQ=255) cAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAg > 1:731675/1‑216 (MQ=255) tCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTc < 1:307631/251‑1 (MQ=255) tCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTc < 1:517811/251‑1 (MQ=255) cGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAg < 1:799321/192‑1 (MQ=255) gTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAg > 1:667450/1‑251 (MQ=255) gAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAg > 1:590971/1‑162 (MQ=255) aaTCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCgg < 1:655163/250‑1 (MQ=255) gCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAgg > 1:771401/1‑207 (MQ=255) cATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAgg < 1:440842/251‑1 (MQ=255) cGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGCATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCttt > 1:99927/1‑251 (MQ=255) gTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGc < 1:512179/236‑1 (MQ=255) tAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTg < 1:45612/251‑1 (MQ=255) aGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAg > 1:137524/1‑147 (MQ=255) aTTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATc < 1:245183/215‑1 (MQ=255) aaaaTGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGCATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGaaaa > 1:41647/1‑250 (MQ=255) aaaTGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATg < 1:727993/251‑1 (MQ=255) tGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCt < 1:394821/251‑1 (MQ=255) tGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGc > 1:849756/1‑193 (MQ=255) ggAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGa > 1:390824/1‑251 (MQ=255) aGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCCCTGAc > 1:689406/1‑249 (MQ=255) cACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAgg > 1:447102/1‑152 (MQ=255) cACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGt < 1:857062/153‑1 (MQ=255) cACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTc < 1:34005/251‑1 (MQ=255) aTCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAg > 1:700777/1‑95 (MQ=255) aTCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGGGAAATGCCTTCACCGACCTGCTTTCtttct > 1:460723/1‑247 (MQ=255) aTCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCtttcgg > 1:116833/1‑247 (MQ=255) tCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAg < 1:275275/143‑1 (MQ=255) cTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGAt > 1:82385/1‑198 (MQ=255) aTTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTcc > 1:478846/1‑238 (MQ=255) tATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAAtttt > 1:801969/1‑251 (MQ=255) ttGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAAAGCCTTCCCTGACCTGCTTCCTTGTGAATATTAAtttttt > 1:396583/1‑250 (MQ=255) gATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCg < 1:620379/250‑1 (MQ=255) ccGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTAtt < 1:856667/251‑1 (MQ=255) gTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATg < 1:238452/189‑1 (MQ=255) tGATTTCGGACATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTc < 1:509733/250‑1 (MQ=255) gTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTa > 1:538499/1‑251 (MQ=255) aTTCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAg > 1:298622/1‑109 (MQ=255) tCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGcc < 1:57942/166‑1 (MQ=255) tCCCAAACGTGCCTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTTCCGATAGtt > 1:492969/1‑251 (MQ=255) cTTTAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTTCTTTCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGGATTTACCGATAg > 1:65576/1‑237 (MQ=255) ttAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCgaga < 1:137041/204‑1 (MQ=255) ttAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGAt < 1:779187/233‑1 (MQ=255) ttAATATCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGGATTTACCGATAGTTAATGTTTCGCGt > 1:401494/1‑249 (MQ=255) atCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCga < 1:599225/197‑1 (MQ=255) atCTCGTTCATAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGt < 1:281010/251‑1 (MQ=255) cgttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGGATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGAt > 1:701147/1‑251 (MQ=255) gttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGAtt > 1:829285/1‑251 (MQ=255) gttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGAt > 1:316508/1‑250 (MQ=255) gttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGGTTTGCGTCTACCGTTGAtt > 1:287486/1‑251 (MQ=255) gttcatAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCGGGAGAAAAGTCTTCACTGAACCGCTTCCTTGCGGTCATTAATTTTTCGCGCGCTTCTGCGAGAGTTATTTCGTCGGCGCCGTATTTACCGAGAGTTAATGTTTCGCGTCTACCGTTGAtt > 1:487766/1‑251 (MQ=255) | CGGGGTTAGAACGCGTTCGCGCTTTTTGAACGTTGCAATAGATGAATTTGCGATTTCATCGGCTGGATTTGGCAGTTTATGTCCGCGCTGAATCGCATATCGGTAGATATTCGCGATTAAATCCCGTACGAAAATGGCCGTGGAAGGCGCACCGCGATCTTTAATTTTATTGCAATGGCGGCGGATTTCATCCGTAGTGATTTCGGTCATTAAGCGATTCCCAAACGTGCCTTTAATATCTCGTTCGTAAGTGGCCACGCGGAGGGCTTTTGTACTTTCTGCCAGTTGCACCTCCTCAAGGTATTTTTCAGCGAAAGCGGAAAAGCGATCTGCATTGCGGATAAGGTCTTTTTGATTACGCTTTTCACCGGCAGGAGAAATGCCTTCACTGACCTGCTTCCTTGCGATCATTAATTTTTCGCGCGCTTCTGCGAGATTTATTCCGTCGGCGCCGTATTTACCGATAGTTAATGTTTCGCGTCTACCGTTGATT > 1/913862‑914354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |