Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	911,314	G→A	intergenic (‑84/‑171)	unknown ← / → unknown	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	911,314	0	G	A	100.0%	40.8 / NA	17	intergenic (‑84/‑171)	unknown/unknown	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (13/4);  total (13/4)

CTACCATGGTAGGGAAAGACAGTTTGGCACTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAGGATAGAATACAACAAATTTGTTGTATGAGCAACATTTTTGTTGTGTTTTTTAAGTGATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAGAACTTACGGAAATGTCTTGGGTTTTGTAGAATGGGCGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATCGTTATTTTAATTTTATGCAGCCCTTTTGCATTGATT  >  1/911106‑911553                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                ctacCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGAGTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAAc                                                                                                                                                                                                       <  1:35867/251‑1 (MQ=255)                                cATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAgg                                                                                                                                                                                                  <  1:72305/225‑1 (MQ=255)                                                                                                            gAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTAt                                                                                            >  1:106857/1‑251 (MQ=255)                                                                                                                                gggTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACatat                                                                         >  1:671737/1‑250 (MQ=255)                                                                                                                                             gCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTAt                                                                                            >  1:120873/1‑218 (MQ=255)                                                                                                                                                         agATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGt                                                                                                                  >  1:568196/2‑184 (MQ=255)                                                                                                                                                                  acaacaAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTAtt                                      >  1:355306/1‑250 (MQ=255)                                                                                                                                                                       aaaTTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTAttgtcat                                 <  1:439048/251‑7 (MQ=255)                                                                                                                                                                          tttGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACatt                                                     >  1:389025/1‑228 (MQ=255)                                                                                                                                                                               tatATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATTGTCattttaattt                         >  1:465795/3‑251 (MQ=255)                                                                                                                                                                                    gtgCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATTGTCATTTTAATTTTATg                     >  1:86253/3‑250 (MQ=255)                                                                                                                                                                                         aCATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACatt                                                     >  1:340025/1‑213 (MQ=255)                                                                                                                                                                                            tttttGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAGATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATTGTCATTTTAATTTTATGc                    >  1:690152/1‑243 (MQ=255)                                                                                                                                                                                            tttttGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATTGTCATTTTAATTTTATGCAGCCCttt            >  1:717576/1‑251 (MQ=255)                                                                                                                                                                                             ttttGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATTGTCATTTTAATTTTATGCAGCCCtttt           >  1:765060/1‑251 (MQ=255)                                                                                                                                                                                                  ttgtGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATTGTCATTTTAATTTTATGCAGCCCTTTTGCAt       <  1:665719/250‑1 (MQ=255)                                                                                                                                                                                                      gtTTTTTAAATAATGATTTATTTGATAACCTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATTGTCATTTTAATTTTATGCAGCCCTTTTGCATTGAtt  >  1:342690/1‑251 (MQ=255)                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                CTACCATGGTAGGGAAAGACAGTTTGGCACTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAGGATAGAATACAACAAATTTGTTGTATGAGCAACATTTTTGTTGTGTTTTTTAAGTGATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAGAACTTACGGAAATGTCTTGGGTTTTGTAGAATGGGCGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATCGTTATTTTAATTTTATGCAGCCCTTTTGCATTGATT  >  1/911106‑911553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑