Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	911,286	A→T	intergenic (‑56/‑199)	unknown ← / → unknown	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	911,286	0	A	T	100.0%	27.7 / NA	12	intergenic (‑56/‑199)	unknown/unknown	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (8/4);  total (8/4)

GACTTATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCACTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAGGATAGAATACAACAAATTTGTTGTATGAGCAACATTTTTGTTGTGTTTTTTAAGTGATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAGAACTTACGGAAATGTCTTGGGTTTTGTAGAATGGGCGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATCGTTATTTTAATTT  >  1/911045‑911530                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                     gACTTATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACAttt                                                                                                                                                                                                                                             >  1:211390/1‑251 (MQ=255)    ttATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTttg                                                                                                                                                                                                                                          <  1:180132/251‑1 (MQ=255)                                                              ctacCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGAGTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAAc                                                                                                                                                                                <  1:35867/251‑1 (MQ=255)                                                                                             cATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAgg                                                                                                                                                                           <  1:72305/225‑1 (MQ=255)                                                                                                                                                                         gAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTAt                                                                     >  1:106857/1‑251 (MQ=255)                                                                                                                                                                                             gggTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACatat                                                  >  1:671737/1‑250 (MQ=255)                                                                                                                                                                                                          gCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTAt                                                                     >  1:120873/1‑218 (MQ=255)                                                                                                                                                                                                                      agATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGt                                                                                           >  1:568196/2‑184 (MQ=255)                                                                                                                                                                                                                               acaacaAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTAtt               >  1:355306/1‑250 (MQ=255)                                                                                                                                                                                                                                    aaaTTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTAttgtcat          <  1:439048/251‑7 (MQ=255)                                                                                                                                                                                                                                       tttGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACatt                              >  1:389025/1‑228 (MQ=255)                                                                                                                                                                                                                                            tatATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATTGTCattttaattt  >  1:465795/3‑251 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                     GACTTATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCACTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAGGATAGAATACAACAAATTTGTTGTATGAGCAACATTTTTGTTGTGTTTTTTAAGTGATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAGAACTTACGGAAATGTCTTGGGTTTTGTAGAATGGGCGTTTCTATTTTTTACTAAGGAACATATCTATGAACACAACCAACATTATTGCCGGAATTATCGTTATTTTAATTT  >  1/911045‑911530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑