Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	911,258	G→A	intergenic (‑28/‑227)	unknown ← / → unknown	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	911,258	0	G	A	100.0%	25.0 / NA	11	intergenic (‑28/‑227)	unknown/unknown	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (6/5);  total (6/5)

AAACGCCCCTTTTCAGAGGCGAAAGACTTATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCACTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAGGATAGAATACAACAAATTTGTTGTATGAGCAACATTTTTGTTGTGTTTTTTAAGTGATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAGAACTTACGGAAATGTCTTGGGTTTTGTAGAATGGGCGTTTCTATTTTTTACTAAGGAACATAT  >  1/911021‑911482                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                 aaaCGCCCCTTTTCAGAGGCGAAAGACTTATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATacaac                                                                                                                                                                                                                     <  1:416876/251‑1 (MQ=255) aaaCGCCCCTTTTCAGAGGCGAAAGACTTATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATacaac                                                                                                                                                                                                                     <  1:53635/251‑1 (MQ=255)                         gACTTATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACAttt                                                                                                                                                                                             >  1:211390/1‑251 (MQ=255)                            ttATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTttg                                                                                                                                                                                          <  1:180132/251‑1 (MQ=255)                                                                                      ctacCATGGTAGGGAAAGACAGTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGAGTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAAc                                                                                                                                <  1:35867/251‑1 (MQ=255)                                                                                                           gTTTGGCAGTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATttgttata                                                                                                                                                                                                         >  1:89479/1‑154 (MQ=255)                                                                                                                     cATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAgg                                                                                                                           <  1:72305/225‑1 (MQ=255)                                                                                                                                aCCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATacaac                                                                                                                                                                                                                     >  1:37601/1‑124 (MQ=255)                                                                                                                                                                                                 gAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTAt                     >  1:106857/1‑251 (MQ=255)                                                                                                                                                                                                                     gggTACCTCCTTTGCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTATTTTTTACTAAGGAACatat  >  1:671737/1‑250 (MQ=255)                                                                                                                                                                                                                                  gCTATACAGTGAAGATAGAATACAACAAATTTGTTATATGTGCAACATTTTTGTTGTGTTTTTTAAATAATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAAAACTTACGGAAATGTCTTGGGTTTCGTAAAATAGGAGTTTCTAt                     >  1:120873/1‑218 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                 AAACGCCCCTTTTCAGAGGCGAAAGACTTATTTTAAGTTTAAGTCTTTTTTGATTTTGTGAACTAAGCCGGTACCGATTTCTTTACTACCATGGTAGGGAAAGACAGTTTGGCACTCATTCAACGTTACCTTGCGATGACTTCCGCGCTTGGTTGCTTCGACTTTGCAGCCTTGCTCAAGCAAGTATCGCAAGAATTCACTGTATTTCATCGGGGTACCTCCTTTGCTATACAGTGAGGATAGAATACAACAAATTTGTTGTATGAGCAACATTTTTGTTGTGTTTTTTAAGTGATGATTTATTTGATAAACTTTTTTCAAAAGCCTGTTTAAAACGTAGGTTTTTTTAATAATGGAATCTGCGACGCAGATCGCAAAATTGAAATAAATTTGAGGGAGAACTTACGGAAATGTCTTGGGTTTTGTAGAATGGGCGTTTCTATTTTTTACTAAGGAACATAT  >  1/911021‑911482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑