Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 669,622 (A)6→7 intergenic (+83/‑83) unknown → / → unknown Undecaprenyl‑phosphate alpha‑N‑acetylglucosaminyl 1‑phosphate transferase (EC 2.7.8.33)/tRNA‑Arg‑CCG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1669,6161.A100.0% 47.0 / NA 19intergenic (+77/‑89)unknown/unknownUndecaprenyl‑phosphate alpha‑N‑acetylglucosaminyl 1‑phosphate transferase (EC 2.7.8.33)/tRNA‑Arg‑CCG
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (11/8);  total (11/8)

ATATTAATGAATGGGTGATGTTTATTGCTTTCATTATTCTGTTCTTCTTATATTCTTACTCTATTACACGGGCGTGGAAAATTACCCGCTGGATACGTCGCATGAAGCGCCGTGCTGCAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGATAATTTATAAATTATATTCACTTTGAAT‑AAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAATATGGTGGCTATAGCTCAGTTGGTAGAGCCCCGGATTGTGA  >  1/669400‑669849
                                                                                                                                                                                                                         |                                                                                                                                                                                                                                         
atatTAATGAATGGGTGATGTTTATTGCTTTCATTATTCTGTTCTTCTTATATTCTTACTCTATTACACGGGCGTGGAAAATTACCCGCTGGATACGTCGCATGAAGCGCCGTGCTGCAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAAT‑aaaaa                                                                                                                                                                                                                                      <  1:14629/222‑1 (MQ=255)
                                                            ctATTACACGGGCGTGGAAAATTACCCGCTGGATACGTCGCATGAAGCGCCGTGCTGCAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAacgac                                                                                                                                                          <  1:463586/239‑1 (MQ=255)
                                                            ctATTACACGGGCGTGGAAAATTACCCGCTGGATACGTCGCATGAAGCGCCGTGCTGCAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAgcg                                                                                                                                                >  1:700944/1‑249 (MQ=255)
                                                            ctATTACACGGGCGTGGAAAATTACCCGCTGGATACGTCGCATGAAGCGCCGTGCTGCAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAgcg                                                                                                                                                >  1:483895/1‑249 (MQ=255)
                                                                  cacGGGCGTGGAAAATTACCCGCTGGATACGTCGCATGAAGCGCCGTGCTGCAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGc                                                                                                                                        <  1:818525/251‑1 (MQ=255)
                                                                          tGGAAAATTACCCGCTGGATACGTCGCATGAAGCGCCGTGCTGCAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTg                                                                                                                                 <  1:520762/250‑1 (MQ=255)
                                                                                                                  ctgcAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCaa                                                                                        >  1:417979/1‑251 (MQ=255)
                                                                                                                     cAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATc                                                                                     <  1:390917/251‑1 (MQ=255)
                                                                                                                                                                   ttAAAATTAAATAAAAAATAATCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAatat                                        <  1:757450/250‑1 (MQ=255)
                                                                                                                                                                                     taatCAGAAAATTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAATATGGTGGCTATAGCTCAGTTg                     <  1:542419/251‑1 (MQ=255)
                                                                                                                                                                                               aTTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAatat                                        <  1:196038/222‑1 (MQ=255)
                                                                                                                                                                                               aTTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAATATGGTGGCTATAGCTCAGTTGGTAGAGccc            >  1:180116/1‑250 (MQ=255)
                                                                                                                                                                                               aTTTATAAATTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAATATGGTGGCTATAGCTCAGTTGGTAGAGccc            >  1:175855/1‑250 (MQ=255)
                                                                                                                                                                                                       aTTATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCAAGCGCTCGTAGCTCGGTTGGTTAGAGCGTTGGCCCCCGGAGCCAAAGGCCGCAGGTTCAATTCCTGTCAAGCGCGCCAAAGGCAATGCAAATTCAGCTAATTCAAAATGGCGGCAATAGCTCAGTTGGTAAAGCCCCGGATtgtg   >  1:23159/1‑251 (MQ=255)
                                                                                                                                                                                                        ttATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCg                                                                                                                        <  1:80666/133‑1 (MQ=255)
                                                                                                                                                                                                        ttATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAatat                                        >  1:224253/1‑213 (MQ=255)
                                                                                                                                                                                                        ttATATTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAATATGGTGGCTATAGCTCAGTTGGTAGAGCCCCGGATTGTGa  >  1:673811/1‑251 (MQ=255)
                                                                                                                                                                                                          atatTCACTTTGCATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAata                                         >  1:669956/1‑210 (MQ=255)
                                                                                                                                                                                                          atatTCACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAATATGGTGGCTATAGCTCAGTTGGTagag               >  1:302445/1‑236 (MQ=255)
                                                                                                                                                                                                               cACTTTGAATAAAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATag                                                                                                                            >  1:561295/1‑122 (MQ=255)
                                                                                                                                                                                                                         |                                                                                                                                                                                                                                         
ATATTAATGAATGGGTGATGTTTATTGCTTTCATTATTCTGTTCTTCTTATATTCTTACTCTATTACACGGGCGTGGAAAATTACCCGCTGGATACGTCGCATGAAGCGCCGTGCTGCAAGACGTTCTAAAATTAAATAGAAATTAATATTTTCATTAAAAAGTTAAAATTAAATAAAAAATAATCAGATAATTTATAAATTATATTCACTTTGAAT‑AAAAAATAGCTGCTAATAAAAATTTATAAAAAAAGACTAGACAAGCACTTTTGAAACTTTTAATATACGCCCCGCAACGACGCTTCCAGCGCTCGTAGCTCAGTTGGATAGAGCGTTGGCCTCCGGAGCCAAAGGTCGCAGGTTCAAATCCTGTCGAGCGCGCCAAAGGTCATGCAAATTCAGCTAATTCAATATGGTGGCTATAGCTCAGTTGGTAGAGCCCCGGATTGTGA  >  1/669400‑669849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑