| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,640,614 | (T)6→7 | intergenic (‑303/+30) | unknown ← / ← unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/Protoporphyrinogen IX oxidase, oxygen‑independent, HemG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,640,608 | 1 | . | T | 100.0% | 184.7 / NA | 67 | intergenic (‑297/+36) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/Protoporphyrinogen IX oxidase, oxygen‑independent, HemG |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (36/31); total (36/31) | |||||||||||
ACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATCTTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACA‑TTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGGAGATCGTCGGTTGCCAAGTGATACGTTGCAAAAATT > 1/1640381‑1640852 | aCCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGaaa < 1:259269/251‑1 (MQ=255) gTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGaaaa < 1:772768/243‑1 (MQ=255) aaTCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAacttac < 1:819090/251‑1 (MQ=255) aTCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATAc < 1:433639/243‑1 (MQ=255) gAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACg > 1:617692/1‑250 (MQ=255) aTCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCtt > 1:256672/1‑251 (MQ=255) tCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGaaa > 1:287681/1‑214 (MQ=255) tataAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCtt > 1:372647/1‑248 (MQ=255) gTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGaaaa > 1:125125/1‑250 (MQ=255) gattgattGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAACTATTTCGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAATATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAAt > 1:269609/1‑251 (MQ=255) gCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCAc > 1:197924/1‑218 (MQ=255) gCATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGt > 1:463494/1‑251 (MQ=255) cATTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTa < 1:32343/251‑1 (MQ=255) aTTAAGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTaa < 1:853011/251‑1 (MQ=255) aaGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACg > 1:12986/1‑206 (MQ=255) aaGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATAtt > 1:232654/1‑233 (MQ=255) aaGCAAGGCCGCAAATTATAGATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGAt > 1:654153/1‑251 (MQ=255) gATGAAGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATa > 1:24903/1‑251 (MQ=255) aaGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGc < 1:645083/250‑1 (MQ=255) aGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAacttactt > 1:832462/1‑151 (MQ=255) aGATATTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCat > 1:839663/1‑251 (MQ=255) aaGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGAtcatca < 1:728998/251‑1 (MQ=255) aaaaTATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATg < 1:759363/250‑1 (MQ=255) ttGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCgaag < 1:232330/251‑1 (MQ=255) gTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATGGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGtt > 1:60972/1‑229 (MQ=255) tttATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGTCTATCATAGGGATCTCTATGATATGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATCCAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTTATACGCATAATAAGTTGGATCATCATGCGATCgaagaa < 1:695446/250‑1 (MQ=255) ccTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGaaa > 1:307627/1‑97 (MQ=255) ccTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAgcg < 1:428418/251‑1 (MQ=255) tttAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCt < 1:552590/175‑1 (MQ=255) gTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATa < 1:705663/201‑1 (MQ=255) gTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAg > 1:893138/1‑243 (MQ=255) gCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGa > 1:834981/1‑174 (MQ=255) gCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCaa > 1:687822/1‑251 (MQ=255) cccTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTTCTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAg < 1:628723/205‑1 (MQ=255) cccTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTc > 1:154161/1‑163 (MQ=255) cccTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTCAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAAt > 1:452320/1‑251 (MQ=255) cccTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAAt > 1:290611/1‑251 (MQ=255) cccTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCATATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGatcat < 1:197182/214‑1 (MQ=255) ttGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAg > 1:889771/1‑169 (MQ=255) aTGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAacac < 1:829248/251‑1 (MQ=255) gCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAg < 1:334980/189‑1 (MQ=255) gCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACcg > 1:559207/1‑251 (MQ=255) gTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGaaa < 1:794006/66‑1 (MQ=255) gTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATAc > 1:280801/1‑177 (MQ=255) gTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAAcc < 1:710639/214‑1 (MQ=255) gTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAgcg < 1:440326/220‑1 (MQ=255) gTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACcgcg > 1:409018/1‑251 (MQ=255) gTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACcgcg > 1:236722/1‑251 (MQ=255) ttatAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAg < 1:681257/184‑1 (MQ=255) ttatAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAAcc < 1:332016/211‑1 (MQ=255) ttatAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGgag > 1:34333/1‑251 (MQ=255) ttatAGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGgag < 1:640584/251‑1 (MQ=255) ataGGGATCTCTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTTTTTTGTACGATCCGTTTCTCCGCCTGTGATACGCATAATACGTTGGATCATCATGCGATCGTAGAAAACATAGCGCGGATAAAGAAATACACCGGCAATCACCGCGgagaa > 1:461388/1‑250 (MQ=255) tctcTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGat > 1:47818/1‑181 (MQ=255) tctcTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGGAGAtcgtc < 1:580755/248‑1 (MQ=255) tctcTATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGGAGATCGTCGGt < 1:670756/251‑1 (MQ=255) ctctATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATa > 1:19947/1‑163 (MQ=255) ctctATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGt < 1:249259/175‑1 (MQ=255) ctctATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGGAGATCGTCGGtt > 1:648557/1‑251 (MQ=255) ctctATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGC‑TAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGGAGATCGTCGGTTg > 1:295248/1‑251 (MQ=255) ctATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATAtt < 1:426235/123‑1 (MQ=255) ctATGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGAt > 1:559600/1‑189 (MQ=255) aTGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACg > 1:464058/1‑94 (MQ=255) tGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGc > 1:229869/1‑161 (MQ=255) tGATAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGc < 1:817245/212‑1 (MQ=255) aTAGGATCAAGCGGATTTTTACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGGAGATCGTCGGTTGCCAAg < 1:572746/250‑1 (MQ=255) tttACATTTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGGAGATCGTCGGTTGCCAAGTGATACGTTGCAAAAAtt < 1:456797/251‑1 (MQ=255) | ACCTATTAAGTTCAATCTTAAAATCATTTAAAACGAATCTATAAGTGCCCACACAGTTTGTATGATTGATTGTTAAAGAACATTTGCATTAAGCAAGGCCGCAAATTATAGATGAAGATCTTATTTGCCGTCAAGAAAATATTTTGTTTATTTTCCTTTAGTTACTGCCCTTGCAGTGCGGATGCGTATTATAGGGATCTCTATGATAGGATCAAGCGGATTTTTACA‑TTTTTTGTCGATAGCTTAGAAAAAATACAACTTACTTATTTCAACTGCAAAAACGCTTCTGAAAACGACCGCACTTTTTGCCAATCCGTATATTCGATTTCTTTTGTAAGATCCGTTTCTCCGCCTGTGATACGCATAATAAGTTGGATCATCATGCGATCGAAGAAACCATAGCGCGGATAAAGCAATGCACCGGCAAACACCGCGGAGATCGTCGGTTGCCAAGTGATACGTTGCAAAAATT > 1/1640381‑1640852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |