| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,379,116 | (G)8→9 | intergenic (‑177/+215) | unknown ← / ← unknown | Apolipoprotein N‑acyltransferase / Copper homeostasis protein CutE/Magnesium and cobalt efflux protein CorC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,379,108 | 1 | . | G | 96.1% | 134.9 / ‑0.4 | 51 | intergenic (‑169/+223) | unknown/unknown | Apolipoprotein N‑acyltransferase / Copper homeostasis protein CutE/Magnesium and cobalt efflux protein CorC |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (23/26); total (25/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAATAATAAAAGGGTGCAAAGGCAAACACGCCGGCAGCGCCGAAAATGAGTGCGATAAGATAAGTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGAAGCCCTGA‑‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAAAGAAGAAACTACGCCACAACCTCTTCCTC > 1/1378860‑1379351 | cAATAATAAAAGGGTGCAAAGGCAAACACGCCGGCAGCGCCGAAAATGAGTGCGATAAGATAAGTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑g‑g < 1:770048/251‑1 (MQ=255) taataaAAGGGTGCAAAGGCAAACACGCCGGCAGCGCCGAAAATGAGTGCGATAAGATAAGTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑g‑g > 1:667157/1‑248 (MQ=255) taataaAAGGGTGCAAAGGCAAACACGCCGGCAGCGCCGAAAATGAGTGCGATAAGATAAGTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑g‑g > 1:250302/1‑248 (MQ=255) acGCCGGCAGCGCCGAAAATGAGTGCGATAAGATAAGTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCa < 1:626301/251‑1 (MQ=255) aagataagTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAAtctc < 1:219079/210‑1 (MQ=255) agataagTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATcc > 1:242776/1‑250 (MQ=255) agataagTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑g‑g < 1:392493/194‑1 (MQ=255) tatTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAGGG‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATc < 1:207560/238‑1 (MQ=255) gCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑g‑g > 1:401754/1‑169 (MQ=255) gcgcgcGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGAt < 1:20837/211‑1 (MQ=255) tctcACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGc < 1:3273/251‑1 (MQ=255) aTTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGAt < 1:459356/192‑1 (MQ=255) aTTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCAc > 1:500474/1‑219 (MQ=255) gAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑g‑gg > 1:128512/1‑119 (MQ=255) gCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGc < 1:791368/134‑1 (MQ=255) tctcccgaCCACAGCCGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATg < 1:894417/226‑1 (MQ=255) ctcccgaCCACAGCCGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAat < 1:805056/209‑1 (MQ=255) ctcccgaCCACAGCCGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAAt > 1:149800/7‑231 (MQ=255) gAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCggg < 1:351018/250‑1 (MQ=255) aaCCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAAtt < 1:140671/221‑1 (MQ=255) aaCCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATtat < 1:497779/223‑1 (MQ=255) aaCCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATtat < 1:624899/223‑1 (MQ=255) aaCCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGgaga > 1:876185/1‑251 (MQ=255) aaCCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGgaga < 1:314580/251‑1 (MQ=255) aaCCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑g‑g < 1:627409/95‑1 (MQ=255) cTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGttt < 1:570037/222‑1 (MQ=255) gTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑G‑GGGGAGGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGCAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATg > 1:40340/1‑217 (MQ=255) cATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCg > 1:41699/1‑251 (MQ=255) cATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCg > 1:81856/1‑251 (MQ=255) cATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑GCGGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCAc > 1:233502/1‑154 (MQ=255) ttGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGc < 1:170041/175‑1 (MQ=255) ttGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGtt > 1:553490/1‑251 (MQ=255) ttGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGA‑‑g‑ggg > 1:48814/1‑77 (MQ=255) gTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTc > 1:52326/1‑250 (MQ=255) gTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACAGCtg > 1:729028/1‑218 (MQ=255) tactTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATaa < 1:309034/198‑1 (MQ=255) actTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATg > 1:803778/1‑199 (MQ=255) actTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAActc > 1:63233/1‑249 (MQ=255) ctTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAActc < 1:657752/248‑1 (MQ=255) gAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTaaaa < 1:387442/167‑1 (MQ=255) aaaCTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTc < 1:730824/249‑1 (MQ=255) cTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAag < 1:288663/251‑1 (MQ=255) cTTGGCCCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCTTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAag < 1:754041/251‑1 (MQ=255) ggCTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATaa < 1:802416/172‑1 (MQ=255) cTCCCCTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAgggg < 1:746834/251‑1 (MQ=255) cccTCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAag > 1:516605/1‑243 (MQ=255) tCGTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAaagaa > 1:590203/1‑251 (MQ=255) gTTCACAGGGGGAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGGACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCg > 1:425517/1‑206 (MQ=255) gggggAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAAAGAAGAAACTACg > 1:882293/1‑251 (MQ=255) gAGCTGGGCGCAGCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAAAGAAGAAACTACGCca > 1:480671/1‑250 (MQ=255) gCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTc < 1:577318/159‑1 (MQ=255) gCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTc > 1:642876/1‑159 (MQ=255) gCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCAc > 1:293278/1‑175 (MQ=255) gCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAag > 1:15764/1‑215 (MQ=255) gCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAaaga > 1:693899/1‑225 (MQ=255) gCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAAAGAAGAAACTACGCcac > 1:560273/1‑239 (MQ=255) gCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAAAGAAGAAACTACGCCACAAcctcttcct > 1:529525/1‑250 (MQ=255) gCCCTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAAAGAAGAAACTACGCCACAAcctcttcct > 1:724638/1‑250 (MQ=255) cccTGAG‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAAAGAAGAAACTACGCCACAAcctcttcctc < 1:825179/250‑1 (MQ=255) | CAATAATAAAAGGGTGCAAAGGCAAACACGCCGGCAGCGCCGAAAATGAGTGCGATAAGATAAGTGAAATATTTGTTCATAAGCGGGATAGCGCGCGTTTTCTCACGCAATTCCTAAATTTTCGTTATTTAATGAAATAAACGGCACGCGTCGGGAAACCACAGCTGTTCGAAACATTGTAACTACTTATATAAAAAGAAAAAAAACTTGGCTCCCCTCGTTCACAGGGGGAGCTGGGCGAAGCCCTGA‑‑G‑GGGG‑GGGAAAATCTCAATTTTTAAGCATGATCTTGTGAAAAAATCAAGATAAATCCCCCCTTCCGCCCTTCGGGCACCTTGCCCGTAAACGGAGGAAGGCAAGATATTTAAAAATATCAATGAATTATAATGTTTCGAACGGCTGTGGTCGGGAGACGCGCGCCACCGTTATCGTTCAACTCTCCCCCCGCCCCTCTTTTCTAAAGAGGGGAAAGAAGAAACTACGCCACAACCTCTTCCTC > 1/1378860‑1379351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |