| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,146,468 | +A | coding (873/1032 nt) | unknown ← | Autoinducer 2 (AI‑2) ABC transporter, permease protein LsrC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,146,466 | 1 | . | A | 100.0% | 215.0 / NA | 78 | W292L (TGG→TTG) | unknown | Autoinducer 2 (AI‑2) ABC transporter, permease protein LsrC |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (46/32); total (46/32) | |||||||||||
CGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCC‑AATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGCCGTTTATGGCGAAAG > 1/1146220‑1146700 | cgcCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCC‑aaat < 1:327065/251‑3 (MQ=255) gaATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACtt > 1:54014/1‑251 (MQ=255) tCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATCGTTCCAAATAGGCAGGCACTTTAagc < 1:590024/251‑1 (MQ=255) aaCAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCg < 1:147467/251‑1 (MQ=255) gAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAagca > 1:779359/1‑235 (MQ=255) cGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTg > 1:157712/1‑251 (MQ=255) cGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTg > 1:294322/1‑251 (MQ=255) aTTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCa > 1:77602/1‑251 (MQ=255) aTTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCa > 1:846268/1‑251 (MQ=255) tCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAgg > 1:805540/1‑251 (MQ=255) gCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAagc > 1:743165/1‑216 (MQ=255) tttCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCaa > 1:42073/1‑251 (MQ=255) tCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGC‑GGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAacac < 1:750125/251‑1 (MQ=255) cAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAacac < 1:229408/251‑1 (MQ=255) cAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAacac < 1:343063/251‑1 (MQ=255) cAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAacac < 1:439761/251‑1 (MQ=255) cAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTCCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAacac < 1:405562/251‑1 (MQ=255) cGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACcg > 1:327887/1‑250 (MQ=255) tCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCgcgc < 1:821370/251‑1 (MQ=255) cAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCgcgc > 1:105565/1‑250 (MQ=255) cAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCgcgc > 1:174980/1‑250 (MQ=255) aCATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGa > 1:464033/1‑251 (MQ=255) taactattCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTa > 1:792119/5‑251 (MQ=255) tAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCACTACGGCGAGCAGAACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCAc > 1:897817/1‑186 (MQ=255) tAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCGCCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAac < 1:607112/238‑1 (MQ=255) tAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTa > 1:792149/1‑251 (MQ=255) tAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTa > 1:482333/1‑251 (MQ=255) tAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTa > 1:527826/1‑251 (MQ=255) tAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTa > 1:505026/1‑251 (MQ=255) ttattCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCC‑aaat < 1:25674/173‑3 (MQ=255) cccTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAagc > 1:524784/1‑185 (MQ=255) cccTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTccc > 1:549921/1‑250 (MQ=255) ctcctTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAGCACCAATGCGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCAGTTTAagc < 1:411624/183‑1 (MQ=255) tcctTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTccc > 1:891373/1‑247 (MQ=255) cctTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAagc < 1:490485/181‑1 (MQ=255) cctTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTg > 1:828909/1‑250 (MQ=255) tATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTgccg > 1:368824/1‑250 (MQ=255) cTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAagc < 1:507247/165‑1 (MQ=255) cTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAgg < 1:778310/202‑1 (MQ=255) cTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAacac < 1:346419/212‑1 (MQ=255) cTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGAt > 1:879547/1‑251 (MQ=255) cTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGAt > 1:668553/1‑251 (MQ=255) ttttATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATc < 1:835743/251‑1 (MQ=255) tttATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAacac < 1:693161/210‑1 (MQ=255) tatCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGcc < 1:161897/251‑1 (MQ=255) atCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCACGTGCCGCCGAGCAAGCTGATCCCGcc > 1:561646/1‑250 (MQ=255) atCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCC‑aaat < 1:791472/141‑3 (MQ=255) cGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATc > 1:9070/1‑165 (MQ=255) tGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACgcaggc < 1:7973/251‑1 (MQ=255) tGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACgcagg < 1:15320/250‑1 (MQ=255) tGCTATTTTCATCTTTCAGAAAACGAGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCATCACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACgcagg < 1:835315/250‑1 (MQ=255) cTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACgcaggcag > 1:565350/1‑251 (MQ=255) cTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACgcaggcag > 1:82468/1‑251 (MQ=255) aTTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAagca > 1:648197/1‑144 (MQ=255) aTTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAgg > 1:893187/1‑180 (MQ=255) tttCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGAt < 1:98588/251‑1 (MQ=255) tttCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGAt < 1:555509/251‑1 (MQ=255) aTCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGcc < 1:613243/251‑1 (MQ=255) gAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACgcaggc < 1:97583/233‑1 (MQ=255) aCGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAgg < 1:755114/153‑1 (MQ=255) aCGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCg > 1:293443/1‑251 (MQ=255) attattGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCg < 1:171637/114‑1 (MQ=255) cgcgAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAgg > 1:866089/1‑250 (MQ=255) tccgtccgTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAAc < 1:732780/251‑1 (MQ=255) gtccgtcAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACCCCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAACCGTTGCCGGt < 1:117148/212‑1 (MQ=255) gtcAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCg > 1:27595/1‑251 (MQ=255) cacCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAacac > 1:900578/1‑112 (MQ=255) ccAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTccc > 1:393193/1‑128 (MQ=255) ccAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACgcaggcag > 1:662920/1‑169 (MQ=255) aCGGCGAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACgcaggc > 1:890765/1‑162 (MQ=255) gAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAagc < 1:160552/53‑1 (MQ=255) gAGCAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATg > 1:816970/1‑251 (MQ=255) cAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGc < 1:443889/249‑1 (MQ=255) cAGTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGc < 1:637454/249‑1 (MQ=255) gTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTgccgc > 1:846458/1‑121 (MQ=255) gTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGccc > 1:543244/1‑141 (MQ=255) gTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGCCGtt > 1:78369/1‑251 (MQ=255) gTACGATACCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGCCGtt > 1:527309/1‑251 (MQ=255) aCCGGCAACAAAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGCCGTTTATGGCg < 1:656179/251‑1 (MQ=255) caacaaAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGTATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGCCGTTTATGGCGAAAg > 1:125817/1‑250 (MQ=255) caacaaAATTGTTCCAAATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATACGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGCCGTTTATGGCGAAAg > 1:414403/1‑250 (MQ=255) | CGCCGAAACCGAGAATTTCAATGATGACCAAACAGAATAACGTCAATTCCCAGCCGTATCTTTTCAACGTCAACATAATTATTCCCTCCTTATTTCGACCGCACTTTTATATCAACGCCCGTGCTATTTTCATCTTTCAGAAAACGGGCATAACGTTGTAATTTCAAATTATTGGCGATCATCACGCGAATCCGTCCGTCAAACACCAATACGGCGAGCAGTACGATACCGGCAACAAAATTGTTCC‑AATAGGCAGGCACTTTAAGCAGCACCAAAATCGTATCGATTTGAATCAGGAAATAGGCGCCCAACACCGCGCCGATTAAATTCCCCGTGCCGCCGAGCAAGCTGATCCCGCCCAGTACGCAGGCAGCGATCGCCTTCATTTCCAAGCCGTTGCCGGTAGAATTCGGCACAAAACCGATTTGCGAGGCAAAAACAATCCCGGCAATTGCCGCCATCATGCCGTTTATGGCGAAAG > 1/1146220‑1146700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |