| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 141,077 | (T)7→8 | intergenic (+78/+6) | unknown → / ← unknown | DEAD‑box ATP‑dependent RNA helicase DeaD (= CshA) (EC 3.6.4.13)/UDP‑glucose 6‑dehydrogenase (EC 1.1.1.22) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 141,070 | 1 | . | T | 87.5% | 179.1 / 20.4 | 72 | intergenic (+71/+13) | unknown/unknown | DEAD‑box ATP‑dependent RNA helicase DeaD (= CshA) (EC 3.6.4.13)/UDP‑glucose 6‑dehydrogenase (EC 1.1.1.22) |
| Reads supporting (aligned to +/- strand): ref base . (3/6); new base T (31/32); total (34/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAATAAACAAATGCGTATGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑TTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTT‑CATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGAATGCTGGAG > 1/140825‑141308 | gAATAAACAAATGCGTATGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAGAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑gtttt > 1:433133/1‑251 (MQ=255)gAATAAACAAATGCGTATGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑ttttt > 1:696800/1‑251 (MQ=255)gAATAAACAAATGCGTATGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑ttttt > 1:564467/1‑251 (MQ=255)gAATAAACAAATGCGTATGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑gtttt > 1:52565/1‑251 (MQ=255)gAATAAACAAATGCGTATGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑gtttt > 1:199602/1‑251 (MQ=255) gCGTATGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTTGCTGTtat > 1:179813/1‑251 (MQ=255) aTGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTTAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAAt < 1:387460/251‑1 (MQ=255) aTGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAAt < 1:137827/251‑1 (MQ=255) tGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATc < 1:310861/251‑1 (MQ=255) tGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATc < 1:506401/251‑1 (MQ=255) tGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATc < 1:570326/251‑1 (MQ=255) cGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTa < 1:702882/251‑1 (MQ=255) cGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTa < 1:727394/251‑1 (MQ=255) aaGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑atat < 1:840708/250‑1 (MQ=255) aaGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑atat < 1:850684/250‑1 (MQ=255) aaGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑atat < 1:366784/250‑1 (MQ=255) aGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑atat < 1:370049/249‑1 (MQ=255) gCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑ttttttttg > 1:832032/1‑219 (MQ=255) aGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCggg > 1:230122/1‑249 (MQ=255) gCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGtat < 1:231859/250‑1 (MQ=255) aaCGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGAc < 1:768268/251‑1 (MQ=255) aCGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGatt < 1:485087/251‑3 (MQ=255) aCGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACt < 1:346247/251‑1 (MQ=255) aCGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACt < 1:485091/251‑1 (MQ=255) cggcgATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATcc < 1:27410/251‑1 (MQ=255) tCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAAAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCCCCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGc < 1:603403/251‑1 (MQ=255) gcggcgGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGGATAGAc > 1:764828/1‑218 (MQ=255) ggACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACCCCGCCCCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACg < 1:748922/250‑1 (MQ=255) ccGTTTTGAAGACAACGGCTTTAAAGGCGAGCGAAAATTTAAAGAAAAAACGCACCGCATTTTTAAAGAAAAACGCGAGTTCAAAAAATAAAAAAGAAACCCCGCACCAAAAAGTGCGGTGTTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGAt < 1:553020/249‑1 (MQ=255) cGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTg > 1:209769/1‑251 (MQ=255) gTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGAc < 1:891501/209‑1 (MQ=255) gTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCCCCATACGATTgg > 1:831250/1‑251 (MQ=255) tttGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGGATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCg > 1:326015/1‑251 (MQ=255) ggCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑CG‑G‑TTTTTTTGGGTGTTATAAATCCGTTTCCTTC‑‑ACATCTCGGGTATAGACTTTATCCTCCACATCCAGGATTTCCATCCCCCATACGATTGGCGAGAATGACATCg > 1:629762/1‑251 (MQ=255) gCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCgg > 1:776612/1‑251 (MQ=255) cTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGAc > 1:293982/1‑193 (MQ=255) ttAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCCCCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACa < 1:278222/244‑1 (MQ=255) gCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACCCCGCACCAAAAAGTGCGGTGTTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCttgttg < 1:693574/249‑1 (MQ=255) gCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑CG‑G‑TTTTTTTGGCTGTTATAAATCCGCTCCCTTA‑‑ATATCGCGGGCATAGACTTTATCCGCCACATCCAGGATTTCCATCCCCCATACGATTGGCGAGAATGACATCGGCTTGCTGCTTGaa > 1:731028/1‑251 (MQ=255) gCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATc > 1:411597/1‑154 (MQ=255) gCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑TTTTTTTTGCTGTTATAAATCCGTTCCCTTA‑‑atat > 1:442538/1‑167 (MQ=255) aTTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑atat < 1:564439/162‑1 (MQ=255) aaaaaaaaaCGCACCGCACTTTTAAAGAAAAACGCGAGTTAAGAAAATAAAAAAGAAACCCCGCACAAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTGGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAAt < 1:101024/248‑1 (MQ=255) aaaaaaCGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTTCTTGAACGCGTTTAAATCAg > 1:784587/1‑251 (MQ=255) aaaaaaCGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGaa > 1:214733/1‑237 (MQ=255) caccgcgcTTTAAAAAAAAAACGCGATTTCAGAAAAAAAAAAAAAAACACCGCACCAAAAAGTGCGGTGTTTTTTCCCAATGAATTTACGGCTTGTCAATGGATAAGC‑G‑‑GTTTTTTTTGGCTGTTATAAAGCCTTTCCCTAA‑‑ATATCGCGGGTAAAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTcaccac < 1:481062/250‑1 (MQ=255) ccgcacTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGGATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACtt > 1:615455/1‑250 (MQ=255) cacTTTTAAAGAAAAACGCGAGTTAAGAAAATAAAAAAGAAACCCCGCACCAAAAAGTGCGGTGTTTTTTCCCGATGAATTTCCGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGa < 1:490474/251‑1 (MQ=255) cTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTTGCTGTTATAAATCCGTTCCCTTA‑‑atat > 1:440606/1‑139 (MQ=255) aGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGGATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGGTTAAATCAGTCACCACTTCCGAGCCAAAAAAGACttttttag > 1:173149/1‑248 (MQ=255) ttCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCtt > 1:657239/1‑192 (MQ=255) taaGAAAATAAAAAAAAAACCCCGCACCAAAAAGTGGGGTGTTTTTTCCCGATGAATTTCCGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTTTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGCCTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCat < 1:692201/249‑1 (MQ=255) aTAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATc < 1:26059/97‑1 (MQ=255) tAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGGATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTTAACGCGGTTAAATCAGTCACCACTTTCGAGCCAAAAAAGTCTTTTTCAGCATATTCCg > 1:14532/1‑249 (MQ=255) aaaaGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACAt > 1:299691/1‑174 (MQ=255) aaGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCCCTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTa > 1:654231/1‑251 (MQ=255) acacCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGttt > 1:556212/1‑190 (MQ=255) ccGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑CTTT‑TTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATc < 1:653269/251‑1 (MQ=255) aCCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGGATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATg > 1:516551/1‑156 (MQ=255) aaaGTGCGGTGGTTTTTCCCGATAAATTTACGGCTTGTCCATGGATAGGCGT‑‑T‑TTTTTTTGGCTGTTAAAAATCCTTTCCCTTA‑‑ATATGGCGGGTATAGCCTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAATCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCacac < 1:842536/251‑1 (MQ=255) ggtTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGGTCGTAAAAAATCACTTTCACACCCGCtttttt > 1:551347/1‑251 (MQ=255) gAATTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATc > 1:314432/1‑51 (MQ=255) aaTTTACGGCTTGTCCATGGATAAGC‑CT‑T‑TTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTc < 1:136517/171‑1 (MQ=255) aaTTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCGGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCt < 1:877556/187‑1 (MQ=255) aTTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑atat > 1:833645/1‑63 (MQ=255) aTTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTTAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTTATGCGTTTGATctt > 1:443254/1‑249 (MQ=255) aTTTACGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCa > 1:888040/1‑250 (MQ=255) aCGGCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTAATATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCacac > 1:16432/1‑224 (MQ=255) gCTTGTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCTTTCCTTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCacac < 1:137130/219‑1 (MQ=255) tttGTCCATGGATAAGC‑CT‑T‑TTTTTTTGGTTGTTAAAAATCCGTCCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGaa < 1:834289/250‑1 (MQ=255) ttGTCCATGGATAAGC‑CT‑T‑TTTTTTTGGCTGTTATAAATCCTTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGAAt < 1:399679/251‑1 (MQ=255) gTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGAc < 1:633382/65‑1 (MQ=255) gTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGaa > 1:419321/1‑248 (MQ=255) gTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGAATg > 1:180140/1‑250 (MQ=255) gTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGAATg > 1:382315/1‑250 (MQ=255) gTCCATGGATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGAATg > 1:575110/1‑250 (MQ=255) tCCATGGATAAGC‑CT‑T‑TTTTTTTGGCTTTTATAAATCCGTTCCCTTA‑‑ATACCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCacac < 1:877742/214‑1 (MQ=255) ggATAAGC‑C‑‑GTTTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTTCCATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGAATGCTGGAg > 1:743161/1‑250 (MQ=255) | GAATAAACAAATGCGTATGTCTTTCATCGGCGAAGCCAAAGGCGAACGAGGCGGCGATAACTTCGGCGGCAAACGTCGCGGCGGACGTTTTGAAGACAACGGCTTTAAAGGCGAGCGTAAATTTAAAGAAAAAACGCACCGCACTTTTAAAGAAAAACGCGAGTTCAGAAAATAAAAAAGAAACACCGCACCAAAAAGTGCGGTGGTTTTTCCCGATGAATTTACGGCTTGTCCATGGATAAGC‑C‑‑G‑TTTTTTTGGCTGTTATAAATCCGTTCCCTTA‑‑ATATCGCGGGTATAGACTTTATCCGCCACATCCAGGATTT‑CATCCGCCATACGATTGGCGAGAATGACATCGGCTTGTTGCTTGAACGCGTTTAAATCAGTCACCACTTCCGAGCCAAAAAAGTCTTTTTCAGCATATTCCGGTTCGTAAATAATCACTTTCACACCCGCTTTTTTGATGCGTTTGATCACGTATTGAATGCTGGAG > 1/140825‑141308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |