Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 564,119 (A)8→7 intergenic (‑98/+1) unknown ← / ← unknown Manganese ABC transporter, periplasmic‑binding protein SitA/tRNA 2‑thiouridine synthesis protein TusE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1564,1120A.100.0% 282.0 / NA 67intergenic (‑91/+8)unknown/unknownManganese ABC transporter, periplasmic‑binding protein SitA/tRNA 2‑thiouridine synthesis protein TusE
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (33/34);  total (33/34)

ACTCTACGGTTGCCGCATCACCGGCGACATTTTGTGCCATATCTTGAATAATAGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTCAAAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATGGGCATCCGTTAATTCCAGATTTTCTAAC  >  1/563877‑564351
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                               
aCTCTACGGTTGCCGCATCACCGGCGACATTTTGTGCCATATCTTGAATAATAGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGAc                                                                                                                                                                                                                                  <  1:529695/250‑1 (MQ=255)
                aTCACCGGCGACATTTTGTGCCATATCTTGAATAATAGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTgggg                                                                                                                                                                                                                 <  1:394094/251‑1 (MQ=255)
                aTCACCGGCGACATTTTGTGCCATATCTTGAATAATAGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTgggg                                                                                                                                                                                                                 <  1:411878/251‑1 (MQ=255)
                                             gAATAATAGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTgggg                                                                                                                                                                                                                 <  1:184892/222‑1 (MQ=255)
                                             gAATAATAGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTg                                                                                                                                                                                     >  1:617294/1‑250 (MQ=255)
                                                taataGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGga                                                                                                                                                                                                                <  1:159691/220‑1 (MQ=255)
                                                    aGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTAcc                                                                                                                                                                                                                          <  1:516975/206‑1 (MQ=255)
                                                          cGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGa                                                                                                                                                                       >  1:822048/1‑251 (MQ=255)
                                                                     cTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTg                                                                                                                                                                                          >  1:543361/1‑221 (MQ=255)
                                                                               cGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACgg                                                                                                                                                  <  1:606845/251‑1 (MQ=255)
                                                                                    aaGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTAtt                                                                                                                                             >  1:705330/1‑251 (MQ=255)
                                                                                       cAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGcc                                                                                                                                          <  1:666792/251‑1 (MQ=255)
                                                                                            ctactGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAt                                                                                                                                     >  1:206439/1‑251 (MQ=255)
                                                                                            ctactGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAt                                                                                                                                     >  1:327095/1‑251 (MQ=255)
                                                                                              actGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAtct                                                                                                                                   <  1:366663/251‑1 (MQ=255)
                                                                                                      agcttaaCGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAg                                                                                                                           >  1:263752/1‑251 (MQ=255)
                                                                                                      agcttaaCGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAg                                                                                                                           >  1:8668/1‑251 (MQ=255)
                                                                                                       gcttaaCGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAg                                                                                                                           >  1:849960/1‑250 (MQ=255)
                                                                                                       gcttaaCGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAg                                                                                                                           >  1:582697/1‑250 (MQ=255)
                                                                                                               cAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCgg                                                                                                                                                                                                                        >  1:268376/1‑149 (MQ=255)
                                                                                                                    aCGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATa                                                                                                                                                      >  1:57236/1‑210 (MQ=255)
                                                                                                                    aCGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAtct                                                                                                                                   >  1:658978/1‑229 (MQ=255)
                                                                                                                    aCGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTgg                                                                                                             <  1:266509/251‑1 (MQ=255)
                                                                                                                         gACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGcc                                                                                                                                          >  1:533619/1‑217 (MQ=255)
                                                                                                                                gtgGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAtc                                                                                                                                    >  1:156061/1‑216 (MQ=255)
                                                                                                                                 tgGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACAt                                                                                                <  1:747392/251‑1 (MQ=255)
                                                                                                                                  ggCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGAc                                                                                                                                                                                                                                  >  1:462425/1‑120 (MQ=255)
                                                                                                                                     taataaACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGa                                                                                            <  1:172854/251‑1 (MQ=255)
                                                                                                                                       ataaACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAAt                                                                                          <  1:419654/251‑1 (MQ=255)
                                                                                                                                       ataaACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAAt                                                                                          <  1:64543/251‑1 (MQ=255)
                                                                                                                                        taaACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATg                                                                                         >  1:850156/1‑251 (MQ=255)
                                                                                                                                                  ttttttCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGc                                                                                       <  1:381526/243‑1 (MQ=255)
                                                                                                                                                  ttttttCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAgg                                                                               >  1:537832/1‑251 (MQ=255)
                                                                                                                                                         tcCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAGCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTtata                                                                        <  1:568641/251‑1 (MQ=255)
                                                                                                                                                          ccTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTatat                                                                       <  1:836020/251‑1 (MQ=255)
                                                                                                                                                          ccTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTatat                                                                       <  1:341817/251‑1 (MQ=255)
                                                                                                                                                          ccTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTatat                                                                       <  1:35082/251‑1 (MQ=255)
                                                                                                                                                               gCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAtc                                                                                                                                    >  1:228287/1‑185 (MQ=255)
                                                                                                                                                               gCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGgag                                                                                  <  1:651478/235‑1 (MQ=255)
                                                                                                                                                               gCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGttt                                                                            >  1:302730/1‑241 (MQ=255)
                                                                                                                                                                          ataAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATa                                                                                                                                                      >  1:357189/1‑156 (MQ=255)
                                                                                                                                                                            aaaaTAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACg                                                      >  1:365180/1‑250 (MQ=255)
                                                                                                                                                                              aaTAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGcc                                                                                                                                          >  1:106354/1‑164 (MQ=255)
                                                                                                                                                                                    aacaTAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATg                                             >  1:123781/1‑251 (MQ=255)
                                                                                                                                                                                     acaTAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAtc                                                                                                                                    <  1:688041/163‑1 (MQ=255)
                                                                                                                                                                                              gcgcGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCa                                                                                                    <  1:557563/186‑1 (MQ=255)
                                                                                                                                                                                                   gACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAAc                                                                                                                                                                >  1:77343/1‑121 (MQ=255)
                                                                                                                                                                                                   gACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATg                              >  1:364958/1‑251 (MQ=255)
                                                                                                                                                                                                     cATTATATTCTTTCTATTTCTAAATGCAAATGATTCTCaaaaaaatta                                                                                                                                                                                                                                        <  1:399059/48‑4 (MQ=255)
                                                                                                                                                                                                     cATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGTCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATggg                            >  1:88184/1‑251 (MQ=255)
                                                                                                                                                                                                     cATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATggg                            >  1:397093/1‑251 (MQ=255)
                                                                                                                                                                                                     cATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGATGCAAATAACGGCTATTGCTTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGgag                                                                                  >  1:55102/1‑197 (MQ=255)
                                                                                                                                                                                                     cATTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATGATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGa                                           <  1:705205/236‑1 (MQ=255)
                                                                                                                                                                                                      aTTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAAt                                                                                                                                                       <  1:788872/127‑1 (MQ=255)
                                                                                                                                                                                                      aTTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAAt                                                                                          <  1:765918/188‑1 (MQ=255)
                                                                                                                                                                                                      aTTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAAt                                                          >  1:780831/1‑220 (MQ=255)
                                                                                                                                                                                                      aTTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGc                                                     <  1:155553/225‑1 (MQ=255)
                                                                                                                                                                                                      aTTATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATggg                            >  1:408336/1‑250 (MQ=255)
                                                                                                                                                                                                       ttATATTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATGGGCa                          >  1:732645/1‑251 (MQ=255)
                                                                                                                                                                                                         atatTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTAACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAAt                                       >  1:719043/1‑236 (MQ=255)
                                                                                                                                                                                                           atTCTTTCTATTTCTAAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATGGGCATCCg                      <  1:750474/251‑1 (MQ=255)
                                                                                                                                                                                                                ttctatttctaAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGgag                                                                                  <  1:7463/186‑1 (MQ=255)
                                                                                                                                                                                                                   tatttctaAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATGGGCATCCGTTAATTcc              <  1:169169/251‑1 (MQ=255)
                                                                                                                                                                                                                    atttctaAATGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTAtc                                                                                                                                    <  1:665761/132‑1 (MQ=255)
                                                                                                                                                                                                                            aTGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCAcc                                                                                                     <  1:261086/155‑1 (MQ=255)
                                                                                                                                                                                                                            aTGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAg                                                                                     <  1:143353/171‑1 (MQ=255)
                                                                                                                                                                                                                             tGCAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTccc                                  <  1:285662/221‑1 (MQ=255)
                                                                                                                                                                                                                               cAAATGATTCTC‑AAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATGGGCATCCGTTAATTCCAGATTTTCTAAc  <  1:403221/251‑1 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                               
ACTCTACGGTTGCCGCATCACCGGCGACATTTTGTGCCATATCTTGAATAATAGTGAACGTAGTGACAACTTTAAATTTCGCATAAGCAAGACTACTGCTTAAGCTTAACGCAAGTACGCTGACTAATGTGGCTAATAAACGCATATTTTTTCTCCTTGGCTTTTTAACTATAAAATAACAACATAAGCTGCGCGGACATTATATTCTTTCTATTTCTAAATGCAAATGATTCTCAAAAAAAATTATAGACATTTTACCGGTTTGGGGAGACCCGCCAGCTTGGTTGCCTGTTTTGCCGGACCATCGGGAAATAAACGTTGCAAATAACGGCTATTGCCTTTATCTTCTCCCAGCTTTTGCGCGGTGGCTTTCACCAACATACGAATGGCAGGAGAGGTTTTATATTCTTGATAAAAATCACGCACAAAATGGATAATTTCCCAATGGGCATCCGTTAATTCCAGATTTTCTAAC  >  1/563877‑564351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑