| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 2 | 147,609 | Δ1 bp | coding (536/558 nt) | unknown → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 2 | 147,609 | 0 | T | . | 100.0% | 115.2 / NA | 28 | coding (536/558 nt) | unknown | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (8/20); total (8/20) | |||||||||||
GATATGAAATTATCTCGAATGGGAGATTTAGCTGGAGTTAGAATAATTTTAAAGAATATGGATGCATTGAGAGTGTTTGTTAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATATGAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGATTATTTTTGAAATTATGTAGTGCATTATTTTCTTATCAGGAAGATACTCCAATAATAGAAGAGTTTAATAA > 2/147425‑147838 | gATATGAAATTATCTCGAATGGGAGATTTAGCTGGAGTTAGAATAATTTTAAAGAATATGGATGCATTGAGAGTGTTTGTTAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACAt < 1:536718/195‑1 (MQ=255) tctcGAATGGGAGATTTAGCTGGAGTTAGAATAATTTTAAAGAATATGGATGCATTGAGAGTGTTTGTTAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTAc > 1:322025/1‑181 (MQ=255) ttAGCTGGAGTTAGAATAATTTTAAAGAATATGGATGCATTGAGAGTGTTTGTTAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGt < 1:474368/251‑1 (MQ=255) cATTGAGAGTGTTTGTTAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGt > 1:851198/1‑136 (MQ=255) gtgtTTGTTAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGtt > 1:771604/1‑207 (MQ=255) gtttgttAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATaa < 1:90044/147‑1 (MQ=255) gtttgttAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGc > 1:231597/1‑195 (MQ=255) gtttgttAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGt > 1:553941/1‑243 (MQ=255) ttCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATc < 1:616444/107‑1 (MQ=255) ttCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATaa > 1:550500/1‑251 (MQ=255) cAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGa < 1:369311/251‑1 (MQ=255) taaataaaACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGATTATTTTTGAAATTATGTAGTGCATTATTTTCTTATCAGGAAGAt < 1:449292/251‑1 (MQ=255) cATGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGATTATTTTTGAAATTATGTAGTGCATTATTTTCTTATCAGGAAGATACTCCaataat < 1:691269/251‑1 (MQ=255) tGATTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCAt < 1:653292/126‑1 (MQ=255) aTTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTa < 1:686427/50‑1 (MQ=255) aTTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAg < 1:424787/57‑1 (MQ=255) aTTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTgg < 1:350718/116‑1 (MQ=255) aTTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGctc < 1:611182/142‑1 (MQ=255) aTTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGtgatga < 1:627471/181‑1 (MQ=255) aTTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGt < 1:278026/176‑1 (MQ=255) aTTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGa < 1:259790/191‑1 (MQ=255) aTTATATAGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGATTATTTTTGAAATTATGTAGTGCATTATTTTCTTATCAGGAAGATACTCCAATAATagaa > 1:670784/1‑251 (MQ=255) atataGAAACTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGATTATTTTTGAAATTATGTAGTGCATTATTTTCTTATCAGGAAGATACTCCAATAATAGAagag < 1:849639/251‑1 (MQ=255) cTCCTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGATTATTTTTGAAATTATGTAGTGCATTATTTTCTTATCAGGAAGATACTCCaataat < 1:809215/235‑1 (MQ=255) ccTAAAAAAGATGGGTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGc < 1:538993/126‑1 (MQ=255) gggTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAg < 1:528749/164‑1 (MQ=255) gggTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGATTATTTTTGAAATTATGTAGTGCATTATTTTCTTATCAGGAAGATACTCCAATAATAGAAGAGTTtaataa < 1:158594/236‑1 (MQ=255) ggTATA‑GAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAg > 1:883818/1‑163 (MQ=255) | GATATGAAATTATCTCGAATGGGAGATTTAGCTGGAGTTAGAATAATTTTAAAGAATATGGATGCATTGAGAGTGTTTGTTAGTGATAATTCAAATACAATCTGTGAACTTAGGAAGGAAAATTTCTTCTGTTATGTAAATAAAACGCATGATTATATAGAAACTCCTAAAAAAGATGGGTATATGAAGTGTACATCAAGTATTTGAAGATAAAAATTATAAACTAAAATTAGAGTTGCAAATTAGAACTCAGTTACAACATGAGTGGGCAACCATAGTTGAAATATTGGGCTCTTTGATGAAAACATCATTTAAAGTTGGACAAGGTGATGAGGGAATAAGATTATTTTTGAAATTATGTAGTGCATTATTTTCTTATCAGGAAGATACTCCAATAATAGAAGAGTTTAATAA > 2/147425‑147838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |