| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,032,314 | (T)11→9 | intergenic (+61/+37) | unknown → / ← unknown | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,032,305 | 0 | T | . | 91.9% | 227.8 / 14.4 | 62 | intergenic (+52/+47) | unknown/unknown | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (33/24); minor base C (2/3); total (35/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
| * | 1 | 1,032,306 | 0 | T | . | 90.2% | 199.1 / 18.4 | 62 | intergenic (+53/+46) | unknown/unknown | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/4); new base . (33/22); total (35/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
TCAATTCTTAAATTCTTTAATGATAATACTAAGGACGCGCCACAAGGCAGCATATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCGTTTTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACATCCATAAAATGAAAATAATACGTAAATTTTAGTAAAACGAGTTACATTTTCAAGTGATATTGA > 1/1032065‑1032546 || tCAATTCTTAAATTCTTTAATGATAATACTAAGGACGCGCCACAAGGCAGCATATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCGtttttttt < 1:287290/248‑1 (MQ=255) ataCTAAGGACGCGCCACAAGGCAGCATATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCAttttt > 1:113357/1‑251 (MQ=255) ccACAAGGCAGCATATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTAtt > 1:353516/1‑251 (MQ=255) acaAGGCAGCATATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGTGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTAttct < 1:433544/251‑1 (MQ=255) aaGGCAGCATATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTAttcttc < 1:378453/251‑1 (MQ=255) agcaTATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATaa > 1:631811/1‑251 (MQ=255) gcaTATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATaaa > 1:584989/1‑251 (MQ=255) cATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGa > 1:269012/1‑250 (MQ=255) ggCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGtttttt > 1:431293/1‑251 (MQ=255) gCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGtttttt < 1:287038/250‑1 (MQ=255) caacTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCt < 1:233071/248‑1 (MQ=255) cTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTgcgc > 1:86317/1‑250 (MQ=255) cTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTgcgc > 1:82155/1‑250 (MQ=255) caacaaATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTc > 1:805654/1‑239 (MQ=255) cATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGt > 1:80953/1‑251 (MQ=255) cTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTc < 1:386739/189‑1 (MQ=255) cTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTAttc > 1:691492/1‑199 (MQ=255) cTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAgg < 1:243863/213‑1 (MQ=255) cTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGttt < 1:722630/240‑1 (MQ=255) cTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGtttt > 1:489979/1‑251 (MQ=255) cTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGtttt > 1:681819/1‑251 (MQ=255) cTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGtttt > 1:461794/1‑251 (MQ=255) cTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGtttt > 1:147758/1‑251 (MQ=255) gTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGt > 1:353572/1‑251 (MQ=255) gCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACACTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCa > 1:273227/1‑250 (MQ=255) acaTAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTcc < 1:271810/251‑1 (MQ=255) acaTAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGGTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTc > 1:52933/1‑250 (MQ=255) caTAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCAtt < 1:326268/230‑1 (MQ=255) caTAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTcc > 1:373017/1‑250 (MQ=255) aaaCATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCt < 1:538307/251‑1 (MQ=255) ttGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACTTTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAGCTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAAc < 1:665093/251‑1 (MQ=255) cgcgGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑TTTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACAt < 1:163905/251‑1 (MQ=255) gcgGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGttt > 1:212182/1‑209 (MQ=255) gAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTAttc > 1:897813/1‑165 (MQ=255) gtgtCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTAttc < 1:301303/160‑1 (MQ=255) gtgtCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGt > 1:147606/1‑251 (MQ=255) tgtCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGt < 1:809109/250‑1 (MQ=255) tCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGTTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGttt < 1:446471/250‑1 (MQ=255) tCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGttt < 1:715551/250‑1 (MQ=255) tCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGttt < 1:691916/250‑1 (MQ=255) gATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACtt > 1:432625/1‑215 (MQ=255) tttACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCt > 1:269121/1‑180 (MQ=255) tttACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCAtt > 1:336113/1‑198 (MQ=255) cTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTcc > 1:90126/1‑201 (MQ=255) cTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGttt > 1:719834/1‑237 (MQ=255) cTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCa > 1:62827/1‑251 (MQ=255) gATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCAtt > 1:302239/1‑251 (MQ=255) gATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTCGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCAtt > 1:685169/1‑251 (MQ=255) aaCAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGtt < 1:629288/251‑1 (MQ=255) aCAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTc < 1:523399/251‑1 (MQ=255) cAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTc < 1:467528/191‑1 (MQ=255) aTTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTc > 1:143431/1‑123 (MQ=255) tAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACAt < 1:24356/251‑1 (MQ=255) aGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCAc < 1:108889/181‑1 (MQ=255) gAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACATCCa > 1:338818/1‑251 (MQ=255) gttaaaatatttatttaaaccgcttttaaacgatttttaaacgcttttttaTTTTCGCATTTTGTTTCGCTTTTTTTTT‑GCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTAAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACAtgc < 1:300962‑M2/226‑4 (MQ=255) ttaaaatatttatttaaaccgcttttaaacgatttttaaacgcttttttATTTTCGCATTTTGTTTCGCTTTTTTTTT‑GCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTAAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACAtgcc > 1:372924‑M2/24‑246 (MQ=255) tttAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACATCCATAAAATGAAaataa < 1:555308/251‑1 (MQ=255) aTTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑‑TTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGttt > 1:721539/1‑190 (MQ=255) aTTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCG‑CTTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTAAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGttt < 1:755651/182‑1 (MQ=255) tttttAAACGCTTTTTTATTTTCGCATTTTGTTTCGCTTTTTTTTT‑GCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTAAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACAtgcccaaaagcccaaattcagcaacagcaccagaac < 1:830328‑M2/250‑37 (MQ=255) ttttAAACGCTTTTTTATTTTCGCATTTTGTTTCGCTTTTTTTTT‑GCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTAAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACAtgcccaaaagcccaaattcagcaacagcaccagaacca < 1:190770‑M2/251‑39 (MQ=255) ttttGTTTCGCTTTTTTTTT‑GCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTAAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACAtgcccaaaagcccaaattcagcaacagcaccagaaccaaccaaattgccgccaaaaactgaac > 1:788025‑M2/1‑188 (MQ=255) || TCAATTCTTAAATTCTTTAATGATAATACTAAGGACGCGCCACAAGGCAGCATATACATTCAATATGGCAACAACTATACAACAAATGACATCTGTATAGCAGACAACATAAACATCACTTGCGCGGAAAAGTGTCAGATTTACGCACTGATAAAACAATTAGAAAATAAGAACAAAAAACCGCTTTAAATGACATTTAAACGATTTTTAAACGCTTTTTTATTTTCGCATTTTGTTTCGTTTTTTTTTTTGCGATTTTTAAAACTTTTCGCATTTTTTATTCTTGTCTATTCTTCAATAAAAAAGGACGCCGTTTTTTCTTGCGCCCTTGTTTTCATTGGTTTTGTTCCACTTATTCCCGCTTGATTCAACATTCTCCCTAGTTTATTCCTTTTTCTCATTTTGTTCGGTGTTTTACATCCATAAAATGAAAATAATACGTAAATTTTAGTAAAACGAGTTACATTTTCAAGTGATATTGA > 1/1032065‑1032546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |