| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,009,341 | (TGCCT)7→5 | intergenic (+189/‑63) | unknown → / → unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,009,314 | 0 | C | . | 100.0% | 80.1 / NA | 20 | intergenic (+162/‑99) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,315 | 0 | T | . | 100.0% | 80.1 / NA | 20 | intergenic (+163/‑98) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,316 | 0 | T | . | 100.0% | 80.1 / NA | 20 | intergenic (+164/‑97) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,317 | 0 | G | . | 100.0% | 80.1 / NA | 20 | intergenic (+165/‑96) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,318 | 0 | C | . | 100.0% | 80.1 / NA | 20 | intergenic (+166/‑95) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,319 | 0 | C | . | 100.0% | 80.1 / NA | 20 | intergenic (+167/‑94) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,320 | 0 | T | . | 100.0% | 80.1 / NA | 20 | intergenic (+168/‑93) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,321 | 0 | T | . | 100.0% | 80.1 / NA | 20 | intergenic (+169/‑92) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,322 | 0 | G | . | 100.0% | 80.1 / NA | 20 | intergenic (+170/‑91) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (12/8); total (12/8) | |||||||||||
| * | 1 | 1,009,323 | 0 | C | . | 100.0% | 80.1 / NA | 20 | intergenic (+171/‑90) | unknown/unknown | Threonyl‑tRNA synthetase (EC 6.1.1.3)/Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (12/8); total (12/8) | |||||||||||
TTCACCGTGGAAGAATTTTTAGACATTCTGAAAAAACAAGTGAGAAATCGCGAATTGAAATTATTGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTAAAGCTCTTTTCCCGAATTGTTTCGATGTAAGCGGTCAATTTTTATTAGAAAAATT > 1/1009075‑1009534 |||||||||| ttCACCGTGGAAGAATTTTTAGACATTCTGAAAAAACAAGTGAGAAATCGCGAATTGAAATTATTGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCATTAATAGGAGTAAAAAATATGcttgccttgcct < 1:483973/251‑1 (MQ=255) aCATTCTGAAAAAACAAGTGAGAAATCGCGAATTGAAATTATTGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcctaaacta < 1:109985/250‑7 (MQ=255) ttattGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTaaaa > 1:762537/1‑251 (MQ=255) gCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcctaaact < 1:563741/199‑6 (MQ=255) gCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCggag > 1:651693/1‑251 (MQ=255) gCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCggag > 1:515156/1‑251 (MQ=255) gCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCAAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcctaaac > 1:446700/1‑194 (MQ=255) aGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCAc > 1:230110/1‑224 (MQ=255) aaTTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgcc > 1:416748/1‑165 (MQ=255) gAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACtttt > 1:99769/1‑250 (MQ=255) tAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcctaaac > 1:82494/1‑158 (MQ=255) gAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgccttgcct > 1:125110/1‑152 (MQ=255) gAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCAc < 1:509339/186‑1 (MQ=255) catcatTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGc < 1:320664/251‑1 (MQ=255) cAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAAct > 1:330672/1‑249 (MQ=255) tttATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAAc < 1:697985/251‑1 (MQ=255) ttCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTacccaacttaaagctc < 1:137326/251‑16 (MQ=255) cTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTacccaacttaaagc < 1:275169/234‑14 (MQ=255) atatTGTATAAAACAAAGTACACTTTGTACTTGATAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTCATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTacccaacttaaagc > 1:34500/1‑217 (MQ=255) atatTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATaaa > 1:42710/1‑151 (MQ=255) atatTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcga > 1:22655‑M1/1‑201 (MQ=255) gTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGcttgccttgccttgccttgcct < 1:79286/78‑1 (MQ=255) gTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcgatgtaa > 1:170108‑M1/1‑196 (MQ=255) gTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTacccaacttaaagctcttttcc < 1:734897/233‑22 (MQ=255) cAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcgatgtaagcggtcaa > 1:511262‑M1/1‑188 (MQ=255) gTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTAcc > 1:71705/1‑193 (MQ=255) acTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcgatgtaagcggtcaatttttatt < 1:843693‑M1/251‑72 (MQ=255) gTACTTGACAACCAGTAATAGGAGTAAAAAATATG‑‑‑‑‑‑‑‑‑‑CTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTT‑AAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCAcaacttacccaacttacccaacttaaagctcttttcccgaattgtttcgatgtaagcggtcaattttta < 1:636407‑M1/243‑70 (MQ=255) |||||||||| TTCACCGTGGAAGAATTTTTAGACATTCTGAAAAAACAAGTGAGAAATCGCGAATTGAAATTATTGGGTGAGGCGTAGTTCTGACAATTAAATGAGCTGAAATTACGCTAGCAGGAATCATCATTCAATAGATTTATTGATTTTTCCGACCGGCGTAGTTTCAGCTTTTTAACACTCGATATTGTATAAAACAAAGTACACTTTGTACTTGACAACCAGTAATAGGAGTAAAAAATATGCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTAAACTAAACGTTAATTGCAAGCAAAATCTATCACTTTTCTTAAAAATTTATTCGGAGGATAAATGATCTCCGAAGAACTTTTCTCTCGTGACGGCGTTTCCGCTAACTCTGCACAACTTACCCAACTTAAAGCTCTTTTCCCGAATTGTTTCGATGTAAGCGGTCAATTTTTATTAGAAAAATT > 1/1009075‑1009534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |