| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,817,171 | 1 bp→CG | intergenic (+35271/+18213) | unknown → / ← unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,817,170 | 1 | . | C | 100.0% | 101.6 / NA | 37 | intergenic (+35270/+18214) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (20/17); total (20/17) | |||||||||||
| * | 1 | 1,817,171 | 0 | T | G | 100.0% | 104.7 / NA | 37 | intergenic (+35271/+18213) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (20/17); total (20/17) | |||||||||||
GCTATATGCAATCTTTCGCCGATGAAATGGCGTGCTTTGTGGATTCCGTAGTAAACGACAAACCGACTTTAGTCAACGGCAACGACGGCTTGCAACCTGTGCTGATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCT‑AAAGCATTTTCTGATGCT‑AAAAAAGACCTGAAACCGATTCAGGTCTTTTGTTTTTCGG‑TGATTAGAAAACACTTGAATTTTTGACCGCACTTTTGCCCCGAAAACCTACAACGGGCTTTCCACTTGCAGGCGTTCGCAAATGCCGGTAATGCGCTTTCAATTATAAATCCATCATC > 1/1816945‑1817288 || gCTATATGCAATCTTTCGCTGACGAAATGGCGTGCTTTGTGGATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAAtttt > 1:496082/1‑251 (MQ=255)gCTATATGCAATCTTTCGCTGACGAAATGGCGTGCTTTGTGGATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAAtttt > 1:418922/1‑251 (MQ=255) ggCGTGCTTTGTGGATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACa > 1:894462/1‑251 (MQ=255) gCTTTGTGGATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACggg > 1:245466/1‑251 (MQ=255) cTTTGTGGATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACggg < 1:803288/250‑1 (MQ=255) cTTTGTGGATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGc < 1:296894/251‑1 (MQ=255) ttGTGGATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACggg < 1:707937/248‑1 (MQ=255) gtgGATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCttt > 1:230784/1‑250 (MQ=255) gATTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTcgg < 1:568767/250‑3 (MQ=255) aTTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAAt > 1:785189/1‑206 (MQ=255) aTTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTcggtt > 1:679263/1‑247 (MQ=255) aTTCCGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTcggtt > 1:27254/1‑247 (MQ=255) ccGTAGTGAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTcggtttg > 1:312966/1‑244 (MQ=255) gtagtgAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTcggtttgcag > 1:28084/1‑242 (MQ=255) tagtgAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTcggtttgcagg < 1:816868/251‑11 (MQ=255) tagtgAACGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTcggtttgcagg < 1:569377/251‑11 (MQ=255) tgaaCGACAAACCGACTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCg < 1:384749/248‑1 (MQ=255) aCTTTAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGt > 1:881958/1‑251 (MQ=255) tttAGTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTaa < 1:325185/251‑1 (MQ=255) gTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggg > 1:612072/1‑249 (MQ=255) tCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtg < 1:861517/251‑4 (MQ=255) tCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtg < 1:891276/251‑4 (MQ=255) tCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATgg < 1:778134/249‑2 (MQ=255) aCGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgaga < 1:603299/251‑7 (MQ=255) cGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaa < 1:620902/251‑8 (MQ=255) cGGCAACGACGGTTTGCAACATGTGCTTATCGCGTTGGCGAGAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCAGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACTCTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaa < 1:452723/251‑8 (MQ=255) ggCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaat > 1:165049/1‑243 (MQ=255) gtttGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTcggtttgca > 1:56981/3‑202 (MQ=255) gtttGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggag > 1:52282/3‑233 (MQ=255) gtttGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCCACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggag > 1:55082/3‑233 (MQ=255) tttGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggag < 1:375722/249‑19 (MQ=255) ccTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggagcggataa > 1:799382/1‑225 (MQ=255) ccTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggagcggataa > 1:332391/1‑225 (MQ=255) ggcAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTAc < 1:615349/163‑1 (MQ=255) aCGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATg > 1:258650/1‑190 (MQ=255) gatgaAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAAt < 1:260690/188‑1 (MQ=255) ggTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGCCCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATgg > 1:132008/1‑110 (MQ=255) || GCTATATGCAATCTTTCGCCGATGAAATGGCGTGCTTTGTGGATTCCGTAGTAAACGACAAACCGACTTTAGTCAACGGCAACGACGGCTTGCAACCTGTGCTGATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCT‑AAAGCATTTTCTGATGCT‑AAAAAAGACCTGAAACCGATTCAGGTCTTTTGTTTTTCGG‑TGATTAGAAAACACTTGAATTTTTGACCGCACTTTTGCCCCGAAAACCTACAACGGGCTTTCCACTTGCAGGCGTTCGCAAATGCCGGTAATGCGCTTTCAATTATAAATCCATCATC > 1/1816945‑1817288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |