Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 561,754 T→C intergenic (+198337/‑10265) unknown → / → unknown tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1561,7540TC100.0% 189.2 / NA 65intergenic (+198337/‑10265)unknown/unknowntRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/25);  total (40/25)

AAGGGGATTTACGTCGTGAAGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGTACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAGAACTTGGAAGTTATGGTAAAAGGACCAGGTCCTGGTCGAGA  >  1/561517‑561973
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                           
aaGGGGATTTACGTCGTGAAGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGc                                                                                                                                                                                                                 <  1:72428/250‑1 (MQ=255)
aaGGGGATTTACGTCGTGAAGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGCACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGc                                                                                                                                                                                                                 <  1:25684/250‑1 (MQ=255)
     gATTTACGTCGTGAAGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCttt                                                                                                                                                                                                           >  1:394104/1‑251 (MQ=255)
         tACGTCGTGAAGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCaat                                                                                                                                                                                                       <  1:12789/251‑1 (MQ=255)
               gtGAAGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACa                                                                                                                                                                                                 >  1:762605/1‑251 (MQ=255)
                tGAAGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACaa                                                                                                                                                                                                <  1:555814/251‑1 (MQ=255)
                  aaGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAAt                                                                                                                                                                                               >  1:287081/1‑250 (MQ=255)
                  aaGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTA‑CCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCg                                                                                                                                                                                             >  1:185347/1‑251 (MQ=255)
                  aaGTAACACTTAACATTAAACACCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAAt                                                                                                                                                                                               >  1:186936/1‑250 (MQ=255)
                        cacTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTa                                                                                                                                                                                          >  1:602450/1‑249 (MQ=255)
                          cTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACtat                                                                                                                                                                                      <  1:328694/251‑1 (MQ=255)
                          cTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACtat                                                                                                                                                                                      <  1:758886/251‑1 (MQ=255)
                              aCATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATaa                                                                                                                                                                                    >  1:330250/1‑249 (MQ=255)
                              aCATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATaa                                                                                                                                                                                    >  1:797060/1‑249 (MQ=255)
                                        ccTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAg                                                                                                                                                                        >  1:530070/1‑251 (MQ=255)
                                           aTTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTa                                                                                                                                                                     >  1:41163/1‑251 (MQ=255)
                                               gATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGc                                                                                                                                                                                                                 <  1:670135/203‑1 (MQ=255)
                                               gATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGAc                                                                                                                                                                               >  1:876167/1‑237 (MQ=255)
                                               gATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGC‑AAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCa                                                                                                                                                                >  1:617263/1‑251 (MQ=255)
                                                aTTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGAGTAAATTAAGATGGCAAAATCACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCa                                                                                                                                                                <  1:641075/251‑1 (MQ=255)
                                                     ggTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACtat                                                                                                                                                                                      >  1:83832/1‑224 (MQ=255)
                                                       ttgttATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCaa                                                                                                                                                                         >  1:712098/1‑235 (MQ=255)
                                                            aTCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTggg                                                                                                                                                      >  1:703812/1‑249 (MQ=255)
                                                            aTCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTggg                                                                                                                                                      >  1:389056/1‑249 (MQ=255)
                                                                 ggTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTActg                                                                                                                                                >  1:241513/1‑250 (MQ=255)
                                                                  gTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTActg                                                                                                                                                >  1:507513/1‑249 (MQ=255)
                                                                               tcgtAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGtt                                                                                                                                 <  1:304078/251‑1 (MQ=255)
                                                                                    gTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGt                                                                                                                            >  1:532758/1‑251 (MQ=255)
                                                                                       tACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTg                                                                                                                                                                                 <  1:263461/195‑1 (MQ=255)
                                                                                           ggTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCaat                                                                                                                                                                                                       >  1:693166/1‑169 (MQ=255)
                                                                                                   gTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAAt                                                                                                               >  1:68435/1‑249 (MQ=255)
                                                                                                       aCGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTAccc                                                                                                         <  1:341458/251‑1 (MQ=255)
                                                                                                          tACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTg                                                                                                                                                                                 >  1:284595/1‑176 (MQ=255)
                                                                                                               aaaCTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAgg                                                                                                                                                                       >  1:121241/1‑181 (MQ=255)
                                                                                                                  cTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATAc                                                                                                                                                                                                  <  1:565946/151‑1 (MQ=255)
                                                                                                                            tACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCgg                                                                                    >  1:485525/1‑251 (MQ=255)
                                                                                                                            tACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGACGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTaaa                                                                                                                <  1:453910/223‑1 (MQ=255)
                                                                                                                              cccGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGc                                                                                                                                                                                                                 <  1:510474/124‑1 (MQ=255)
                                                                                                                              cccGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGc                                                                                                                                                           <  1:550043/178‑1 (MQ=255)
                                                                                                                              cccGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCt                                                                                                                                                          >  1:324455/1‑179 (MQ=255)
                                                                                                                              cccGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTg                                                                                                                           >  1:100594/1‑210 (MQ=255)
                                                                                                                              cccGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCa                                                                                  >  1:27185/1‑251 (MQ=255)
                                                                                                                               ccGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGt                                                                                                                                                                      >  1:489018/1‑166 (MQ=255)
                                                                                                                               ccGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAg                                                                                 >  1:677324/1‑251 (MQ=255)
                                                                                                                                         ccTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAgg                                                                                          >  1:313040/1‑232 (MQ=255)
                                                                                                                                          cTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTgg                                                                                                                          >  1:15116/1‑199 (MQ=255)
                                                                                                                                          cTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTtgtg                                                                        >  1:876266/1‑249 (MQ=255)
                                                                                                                                          cTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTtgtg                                                                        >  1:770049/1‑249 (MQ=255)
                                                                                                                                           tCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTg                                                                     <  1:261427/251‑1 (MQ=255)
                                                                                                                                                     aTCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAgg                                                                                                                                   <  1:410879/179‑1 (MQ=255)
                                                                                                                                                      tCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCaat                                                                                                                                                                                                       <  1:230557/110‑1 (MQ=255)
                                                                                                                                                       cAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAg                                                         <  1:16259/251‑1 (MQ=255)
                                                                                                                                                                    gggTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTActgc                                                                                                                                               >  1:571448/1‑152 (MQ=255)
                                                                                                                                                                     ggTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCt                                                                                                                                                          >  1:484033/1‑140 (MQ=255)
                                                                                                                                                                      gTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAg                                           <  1:19362/250‑1 (MQ=255)
                                                                                                                                                                        aaaTTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGc                                                                                   >  1:514065/1‑208 (MQ=255)
                                                                                                                                                                                aTGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGTTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAGAACTTGGAAg                                 <  1:172805/250‑1 (MQ=255)
                                                                                                                                                                                       aaaCACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAGAACTTGGAAGTTATGGTa                         <  1:695284/251‑1 (MQ=255)
                                                                                                                                                                                               gTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTc                                                                                                    <  1:704463/168‑1 (MQ=255)
                                                                                                                                                                                               gTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGCTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAGAACTTGGAAGTTATGGTAAAAGGAc                  >  1:880228/1‑250 (MQ=255)
                                                                                                                                                                                                ttCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAGAACTTGGAAGTTATGGTAAAAGGAcc                 <  1:159007/250‑1 (MQ=255)
                                                                                                                                                                                                    tGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAGAACTTGGAAGTTATGGTAAAAGGACCAGGt             <  1:396384/250‑1 (MQ=255)
                                                                                                                                                                                                              cGTGTAAAAAAACAAGTTGTAGATGGCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAGAACTTGGAAGTTATGGTAAAAGGACCAGGTCCTGGTCgaga  >  1:563165/1‑251 (MQ=255)
                                                                                                                                                                                                                                       gCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAAc                                                                                                                                                                                   >  1:227045/1‑49 (MQ=255)
                                                                                                                                                                                                                                       gCGTTGCACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGtt                                                                                        >  1:502573/1‑140 (MQ=255)
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                           
AAGGGGATTTACGTCGTGAAGTAACACTTAACATTAAACGCCTATTAGATTTAGGTTGTTATCGTGGTTTACGTCATCGTCGTAGTTTACCGGTACGTGGTCAACGTACTAAAACTAATGCGCGTACCCGTAAGGGTCCTCGTAAGCCGATCAAAAAATAGTCGGGGTAAATTAAGATGGCAAAAACACCAGTTCGTGCACGTAAACGTGTAAAAAAACAAGTTGTAGATGGCGTTGTACACATTCACGCATCTTTCAATAATACAATCGTTACTATAACTGACCGCCAAGGTAATGCATTAGCTTGGGCTACTGCTGGTGGTTCAGGTTTCCGTGGTTCTCGTAAATCTACCCCGTTCGCTGCACAGGTTGCGGCAGAACGTTGTGCTGAAATTGTAAAAGAATTCGGCTTAAAGAACTTGGAAGTTATGGTAAAAGGACCAGGTCCTGGTCGAGA  >  1/561517‑561973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑