| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 554,856 | A→C | intergenic (+191439/‑17163) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 554,856 | 0 | A | C | 100.0% | 78.7 / NA | 28 | intergenic (+191439/‑17163) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (16/12); total (16/12) | |||||||||||
CGGCAAAAGACAATCAGAAAAGATCCGACTAACGGATGCTGAAAACGAAACAAAAGTGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCAAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACACACCAAATGGAACTGTAAGTACCACATTGTTTTCACCCT > 1/554609‑554960 | cGGCAAAAGACAATCAGAAAAGATCCGACTAACGGATGCTGAAAACGAAACAAAAGTGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCcaaa < 1:838338/251‑1 (MQ=255) tCCGACTAACGGATGCTGAAAACGAAACAAAAGTGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTc < 1:898334/251‑1 (MQ=255) cTGAAAACGAAACAAAAGTGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGc < 1:130742/251‑1 (MQ=255) aaaaCGAAACAAAAGTGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCa < 1:859212/250‑1 (MQ=255) cGAAACAAAAGTGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGAc < 1:517810/251‑1 (MQ=255) aaaCAAAAGTGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGa > 1:324282/1‑251 (MQ=255) tGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGt < 1:881643/249‑1 (MQ=255) gTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGAt > 1:19153/1‑209 (MQ=255) gTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATca > 1:820650/1‑251 (MQ=255) cATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATaggag < 1:492080/204‑1 (MQ=255) aTTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATcacat > 1:25034/1‑250 (MQ=255) ttATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATagg > 1:803052/1‑200 (MQ=255) ttATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATTGTAAGTAAAGCCAATGACGATTCAAGTCTATcacata > 1:837685/1‑249 (MQ=255) ttATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGa > 1:4469/1‑231 (MQ=255) ttATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATcacata > 1:446888/1‑249 (MQ=255) ttATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAAAAAAACCGTACCCTATGCATTTGGAATCAAAAAGCTTAAGCGGTCAACCTAAAAAATCCTCACTATATAAAAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGAAAAGCCAATGACGATTCAAGTCTATcccata > 1:829511/1‑246 (MQ=18) tataGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATcacatac < 1:503469/251‑4 (MQ=255) ataGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATcacatac > 1:153259/1‑247 (MQ=255) taGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTc > 1:646567/1‑207 (MQ=255) gTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGa > 1:774111/1‑251 (MQ=255) aTTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGAAc < 1:48873/251‑1 (MQ=255) aTTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGAAc < 1:199794/251‑1 (MQ=255) tttCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTTTAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATAAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAAAAAGGCTGAAAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTTTATCACATACCAAATGGaa > 1:262171/1‑247 (MQ=17) cGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGAACTGTAAGTATCACAt < 1:681270/251‑1 (MQ=255) cGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGAACTGTAAGTATCACAt < 1:538243/251‑1 (MQ=255) aTAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGAACTGTAAGTATCACAtcgtcttcccccc < 1:689041/251‑13 (MQ=255) aTAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGAACTGTAAGTATCACATCGTCTTCAccc > 1:482792/1‑250 (MQ=255) aTAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGAACTGTAAGTATCACATCGTCTTCAccc > 1:229543/1‑250 (MQ=255) aTAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCCAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACATACCAAATGGAACTGTAAGTATCACATCGTCTTCAccc > 1:165471/1‑250 (MQ=255) | CGGCAAAAGACAATCAGAAAAGATCCGACTAACGGATGCTGAAAACGAAACAAAAGTGCGGTCATTATAGAGGGTATTTTTCCATTTAGCGAATCATGCCAATAAAAACCCGAGACTGGCTCGGGTTTTTGTTTATAGCTAGACAACGTCTAGCTATAAACAAAACCGTACGCTATGCATATGGAATCAAAGAGCTTAAGCGGTCAACATAAAAAATCCTCACTATATAAGAATAAGGCTGACAACCAAAATTCAAGATATAGGAGGATAAGTCAATGGTAAGTAAAGCCAATGACGATTCAAGTCTATCACACACCAAATGGAACTGTAAGTACCACATTGTTTTCACCCT > 1/554609‑554960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |