| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 433,678 | T→C | intergenic (+70261/‑138341) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 433,678 | 0 | T | C | 100.0% | 276.6 / NA | 89 | intergenic (+70261/‑138341) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/49); total (40/49) | |||||||||||
GGGTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTTACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGTGAAAGCTTTACTTCTAAAATCAATCCAGAAGTGATCAAGAACCTTGAGTA > 1/433439‑433923 | gggTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACaa < 1:867409/250‑1 (MQ=255) gTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAAt < 1:737474/250‑1 (MQ=255) ttCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTa < 1:510916/251‑1 (MQ=255) cACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTAtt > 1:11150/1‑251 (MQ=255) ggATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAata > 1:410084/1‑246 (MQ=255) ggATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTa > 1:396709/1‑251 (MQ=255) ggATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTa > 1:386790/1‑251 (MQ=255) aTAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTAcc < 1:117968/251‑1 (MQ=255) aTAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTAc > 1:87490/1‑250 (MQ=255) aTAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTAc > 1:405334/1‑250 (MQ=255) aTTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTa > 1:195262/1‑251 (MQ=255) aTTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTa > 1:485738/1‑251 (MQ=255) tAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt < 1:143031/251‑1 (MQ=255) tAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt < 1:178373/251‑1 (MQ=255) gCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCa > 1:191811/1‑251 (MQ=255) cAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATcc < 1:103710/249‑1 (MQ=255) aTGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATg > 1:410838/1‑197 (MQ=255) gTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGtttt > 1:452972/1‑251 (MQ=255) cAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt < 1:202289/231‑1 (MQ=255) gaatgaaAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAg > 1:10476/1‑176 (MQ=255) atgaaAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATg < 1:271595/182‑1 (MQ=255) atgaaAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt < 1:859602/223‑1 (MQ=255) cATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTg < 1:251194/251‑1 (MQ=255) cATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTg < 1:481504/251‑1 (MQ=255) ttAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTgagag < 1:623168/251‑1 (MQ=255) ttAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTgagag < 1:318441/251‑1 (MQ=255) tAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTAcc < 1:286239/191‑1 (MQ=255) aagCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGa < 1:805261/250‑1 (MQ=255) aaaTATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCa < 1:423053/229‑1 (MQ=255) aaTTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTAttt < 1:432506/157‑1 (MQ=255) tCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt > 1:136678/1‑178 (MQ=255) ctTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAAc > 1:137493/1‑127 (MQ=255) ctTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGa > 1:399312/1‑222 (MQ=255) ctTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAAtt > 1:417278/1‑251 (MQ=255) tttGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGa < 1:359714/131‑1 (MQ=255) tttGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt < 1:578674/171‑1 (MQ=255) tttGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt > 1:311495/1‑171 (MQ=255) gAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAat > 1:135910/1‑142 (MQ=255) aGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATccc < 1:482395/250‑1 (MQ=255) gTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATgg < 1:328032/176‑1 (MQ=255) gTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTgagag > 1:136662/1‑207 (MQ=255) tGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTgag < 1:830611/194‑1 (MQ=255) caATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTagag > 1:27766/1‑203 (MQ=255) atcaatTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTagag < 1:777841/191‑1 (MQ=255) atcaatTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTacaac < 1:227175/207‑1 (MQ=255) atcaatTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTacaac > 1:794280/1‑207 (MQ=255) atcaatTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGAtt < 1:648547/251‑1 (MQ=255) atcaatTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGAtt < 1:602513/251‑1 (MQ=255) caatTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATgg < 1:598831/141‑1 (MQ=255) caatTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGc < 1:622899/162‑1 (MQ=255) caatTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTacaac < 1:711309/205‑1 (MQ=255) ttACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTgag < 1:500822/167‑1 (MQ=255) ttACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATcc > 1:834507/1‑210 (MQ=255) cAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt > 1:514384/1‑125 (MQ=255) cAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATcc < 1:27892/207‑1 (MQ=255) aTAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt > 1:625365/1‑123 (MQ=255) tAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt > 1:806408/1‑122 (MQ=255) aGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATa < 1:36243/122‑1 (MQ=255) aGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATcc < 1:660556/203‑1 (MQ=255) ttCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATcc > 1:674253/1‑193 (MQ=255) tCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTgagag < 1:79935/151‑1 (MQ=255) tCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTacaac < 1:624524/184‑1 (MQ=255) tCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGt > 1:845992/1‑251 (MQ=255) cTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAat > 1:321937/1‑83 (MQ=255) cTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt > 1:32959/1‑109 (MQ=255) cTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGtt < 1:795246/124‑1 (MQ=255) cTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAat > 1:871042/1‑160 (MQ=255) cTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTag > 1:37672/1‑165 (MQ=255) cTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGTg > 1:763539/1‑251 (MQ=255) atatTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTgagag > 1:151959/1‑145 (MQ=255) atatTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTagag > 1:543932/1‑162 (MQ=255) atTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAAc > 1:421628/1‑212 (MQ=255) tGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGa < 1:593207/149‑1 (MQ=255) tGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTacaac < 1:407431/174‑1 (MQ=255) tGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGat > 1:139718/1‑190 (MQ=255) tGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGTGAAAGCTTTa > 1:669669/1‑251 (MQ=255) ggTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCt < 1:859137/168‑1 (MQ=255) ggTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCt > 1:150179/1‑168 (MQ=255) ccTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTagag < 1:480182/146‑1 (MQ=255) ccTCCAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTacaa > 1:109542/1‑161 (MQ=255) cAATCAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGAt < 1:155972/201‑1 (MQ=255) cAAAAGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATcc < 1:426051/162‑1 (MQ=255) aaaaGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGTGAAAGCTTTACTTCTAAAATCAATCCAGAAg < 1:848505/251‑1 (MQ=255) aaaaGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGTGAAAGCTTTACTTCTAAAATCAATCCAGAAg < 1:173058/251‑1 (MQ=255) aaaGAAGAATTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATcc > 1:642391/1‑160 (MQ=255) aTTTCCTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGAt < 1:172716/70‑1 (MQ=255) ccTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAatat < 1:760477/119‑1 (MQ=255) cTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATgg < 1:803380/75‑1 (MQ=255) cTAGTTACCTCACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGTGAAAGCTTTACTTCTAAaatc < 1:630205/227‑1 (MQ=255) tacctcaccAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGTGAAAGCTTTACTTCTAAAATCAATCCAGAAGTGATCAAGAACCTTGAGTa > 1:565726/1‑251 (MQ=255) | GGGTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAAAAAGCATCTTAGCTAAGAAGCAAATATGAAAATTTATATTTCCCTCTTTTGAGTATCAATCCATGAAAAATCACAATGAAAATCAATCAATTACAATAGTAACGGCATTCTTTGATATTGGTAGGGGTGACCTCCAATCAAAAGAAGAATTTCCTAGTTACCTTACCAGAACAAATGATACCTATTTTGAATATTTTACCAAACTGGCAACTTTAGATAATCCAATGGTAGTTTTTACAAGTTACGAGCATATTGAGAGAGTAAAGAATATTAGAGGAACCAAACCTACAACAATTATCCCATTTGATATTAATAAATTTCGTAAAACCTTAGATTCAATTAAAAATATTCAAAAAAGTGAAAGCTTTACTTCTAAAATCAATCCAGAAGTGATCAAGAACCTTGAGTA > 1/433439‑433923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |