| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 326,666 | T→C | intergenic (‑42037/‑36661) | unknown ← / → unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 326,666 | 0 | T | C | 100.0% | 245.8 / NA | 84 | intergenic (‑42037/‑36661) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (43/41); total (43/41) | |||||||||||
AATAGGTAAATTTAAATCAATCAAGCCTTTCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCTCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCACTAAGCAAACG > 1/326423‑326895 | aaTAGGTAAATTTAAATCAATCAAGCCTTTCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCAc < 1:871191/251‑1 (MQ=255)aaTAGGTAAATTTAAATCAATCAAGCCTTTCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCAc < 1:102611/251‑1 (MQ=255) aaaTCAATCAAGCCTTTCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTAttt > 1:301524/1‑250 (MQ=255) aaaTCAATCAAGCCTTTCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTc < 1:69097/251‑1 (MQ=255) atcaatcaAGCCTTTCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCg < 1:358190/251‑1 (MQ=255) tttCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGaa > 1:468213/1‑251 (MQ=255) tttCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGaa > 1:472030/1‑251 (MQ=255) cTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCg > 1:568454/1‑234 (MQ=255) cTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAg > 1:81716/1‑251 (MQ=255) caccaGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAAc < 1:97711/251‑1 (MQ=255) caccaGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAAc < 1:407277/251‑1 (MQ=255) caccaGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCACCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAAc < 1:413179/251‑1 (MQ=255) ttttCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGc < 1:380552/251‑1 (MQ=255) tCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATaa > 1:416742/1‑240 (MQ=255) gTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCAccg > 1:582182/1‑251 (MQ=255) gTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCAcc < 1:164397/250‑1 (MQ=255) gTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTGCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACg < 1:531555/237‑1 (MQ=255) gTACATATCCGGCGCCTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCAccg > 1:900047/1‑251 (MQ=255) tACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGc < 1:600867/237‑1 (MQ=255) tACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCAccgc < 1:899431/251‑1 (MQ=255) tatCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGt > 1:89332/1‑219 (MQ=255) aaGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCAAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGc < 1:583983/216‑1 (MQ=255) gTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTa > 1:120502/1‑196 (MQ=255) ttttttACCGCCCGCCCCCAACACAGAAATGGCATTAGGCTGCCCCATTGCCGTCATTCGCGTCCCGTCAATAGGATCAAGGGCAATGAACACCAGCTCACCCATGCCCGAGCCGACTTTTTCCCCGAAATACACCATAGGTGCCTGACCAATTTCCCCTCCACCAATCTCTATTTCCGCATCCATGTAAATTAAGTTCACAATATAACGCTTGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATccc < 1:3997/250‑1 (MQ=255) tttttACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCAc > 1:543795/1‑163 (MQ=255) tttACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTc > 1:221574/1‑174 (MQ=255) cgccgcCAACACAAAAAGGGCATTAGACTGACCCATTCCCGTCATTCGCGAACCGTCAATAGGATCAACGGCAATGGACACCAGCACCCCCATGCCCAAACCAACTTTTTCACCGATATACAACATAGGTGCCTAAACAATTTCCCCTGCACCAACCCCTATTTCCGCATCCATATGAATTAAGTTAAACATAAACCCCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAAcc < 1:486499/251‑1 (MQ=255) cacaGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGc < 1:236147/190‑1 (MQ=255) cacaGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCaaaa > 1:538516/1‑250 (MQ=255) gAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATccc > 1:766883/1‑226 (MQ=255) gAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCa > 1:897312/1‑239 (MQ=255) gCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAAt < 1:532819/161‑1 (MQ=255) gCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAAcg > 1:902107/1‑250 (MQ=255) gCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAAcg > 1:467014/1‑250 (MQ=255) aGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCaa > 1:676197/1‑251 (MQ=255) gTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATaa > 1:125889/1‑167 (MQ=255) gTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTc > 1:234597/1‑250 (MQ=255) gTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTc > 1:259049/1‑250 (MQ=255) gTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTc > 1:832895/1‑250 (MQ=255) ccATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATcc > 1:185126/1‑191 (MQ=255) ttCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAAt > 1:521679/1‑251 (MQ=255) aCCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTc > 1:399629/1‑114 (MQ=255) aCCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGc < 1:161571/148‑1 (MQ=255) cAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAAc > 1:154451/1‑229 (MQ=255) aTAGGATCAACGGCAATGGACACCAGCTCCCCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGc < 1:318237/251‑1 (MQ=255) gaccAACGGCAATGGACACCAGCCCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAACCACTATTCCCGCACCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGctc < 1:5560/246‑1 (MQ=255) cAACGGCAATGGACACCAGCTCACCCATGCCCGACCCGACTTTTTCACCGATATACAACATGGGTGCCTGATCATTTTCCCCTTCACCAATCCCTATTTCCCCATCCATATGAATTAAGTTCAGAATATAACGCAGGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTc < 1:584245/251‑1 (MQ=255) cGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATa > 1:130582/1‑251 (MQ=255) cAATGGACCCCAGCTCCCCCATGCCCGAACCGCCTTTTTCCCCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACTAATCACTATTCCCGCTTCCATATGAATTAAGTTCAGCATAAAACCCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATg < 1:450895/251‑1 (MQ=255) cAATGGACCCCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTCCCCCTTCACCAATCCCTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATg < 1:261574/251‑1 (MQ=255) cAATGGACCCCAGCTCACCAATGCCCGAACCGATTTTTTCCCCGATATACAACATGGGTGCCTGATCAATTTCCCCTTCCCCAATCACTATTCCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGTTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATg < 1:134861/251‑1 (MQ=255) cAATGGACACCAGCTCCCCCATGCCCGAACCGCCTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATACCGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt < 1:885282/250‑1 (MQ=255) ggACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGctc > 1:141410/1‑236 (MQ=255) ggACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATg > 1:55077/1‑247 (MQ=255) ccAGCTCCCCCATGCCCGAACCGATTTTTTCCCCGATATACAACATAGGTGCCTGATCAATTCCCCCTTCACCAATCACTATTCCCGCATCCATATGAATTAAGTTCAGAATATACCGCATGGCTTTCCCCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt < 1:35417/241‑1 (MQ=255) ccAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGc > 1:663118/1‑175 (MQ=255) cATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAAc < 1:130968/107‑1 (MQ=255) aTGCCCGAACCGCCTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCCCCAATCACTATTTCCGCATCCATATGAATTAATTTCAGCATATACCGCATGTCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAAtg < 1:28253/251‑1 (MQ=255) tGCCCGAACCGACTTTTTCCCCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt < 1:66465/229‑1 (MQ=255) gCCCGACCCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCCCCAATCACTATTCCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATccc < 1:862100/235‑1 (MQ=255) gACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt > 1:618263/1‑219 (MQ=255) ccGATATACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt > 1:38370/1‑209 (MQ=255) cGATATACAACATAGGTGCCTGATCAATTCCCCCTCCACCAATCACTATTCCCGCACCCATATGAATTAAGTTCAGCATATACCGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCAc < 1:877828/251‑1 (MQ=255) cGATATAAAACATAGGTGCCTGATCAATTCCCCCTTCACCAATCCCTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCAc < 1:382666/251‑1 (MQ=255) atatACAACATAGGTGCCTGATCAATTTCCCCTTCCCCAATCCCTATTTCCGCATCCATATAAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt < 1:827845/206‑1 (MQ=255) atatACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGa < 1:795807/63‑1 (MQ=255) atatACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGc > 1:463286/1‑194 (MQ=255) atatACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt > 1:397311/1‑206 (MQ=255) atatACAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCACTa > 1:643411/1‑251 (MQ=255) atatACAACATAGGTGCCTGATCAATTCCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCAc < 1:635546/249‑1 (MQ=255) atatACAACATAGGTGCCTGACCAATTTCCCCTTCACCAATCACTATTCCCGCACCCATATGAATTAAGTTCAGCATATACCGCATGTCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt < 1:637188/206‑1 (MQ=255) atccaacaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCAGGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCa < 1:838026/136‑1 (MQ=255) ataCAACATAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAAGTCCATTTTAGCAc > 1:296778/1‑247 (MQ=255) caacaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCat > 1:827940/1‑72 (MQ=255) caacaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGc < 1:473232/79‑1 (MQ=255) caacaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGc > 1:39867/1‑84 (MQ=255) caacaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGc < 1:870953/189‑1 (MQ=255) caacaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAAt > 1:114896/1‑201 (MQ=255) caacaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCAc > 1:291515/1‑244 (MQ=255) acaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGc < 1:615298/77‑1 (MQ=255) acaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATg > 1:67040/1‑200 (MQ=255) acaTAGGTGCCTGATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCAc > 1:824427/1‑242 (MQ=255) caTAGGTGCCTGATCAATTTCCCCTTCACCAACCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATACCGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCACTAAGCAAACg < 1:266784/251‑1 (MQ=255) gATCAATTTCCCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAAct > 1:305632/1‑152 (MQ=255) | AATAGGTAAATTTAAATCAATCAAGCCTTTCACTTCCGGGCCGACCACCAGTTTTTCCATGTACATATCCGGCGCTTTTAAAAAGGTATTTTTACCGCCCGCCGCCAACACAGAAATGGCATTAGACTGTCCCATTGCCGTCATTCGCGTACCGTCAATAGGATCAACGGCAATGGACACCAGCTCACCCATGCCCGAACCGACTTTTTCACCGATATACAACATAGGTGCCTGATCAATTTCTCCTTCACCAATCACTATTTCCGCATCCATATGAATTAAGTTCAGCATATAACGCATGGCTTTCACCGCCGCATCATCCGCTGCATTTTTATCCCCGCGCCCCAACCAGGCAAAACCGGCTAACGCGGCAACTTCCGTAACTCTTGAAAATTCAATGGCTAATGCTCTGTTCATAATGTATCCCTTAAAATAAAAATGTGAAATAGGTCCATTTTAGCACTAAGCAAACG > 1/326423‑326895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |