Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,992,764	T→G	intergenic (‑93021/–)	unknown ← / –	tRNA‑Met‑CAT/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,992,764	0	T	G	100.0%	12.9 / NA	6	intergenic (‑93021/–)	unknown/–	tRNA‑Met‑CAT/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (3/3);  total (3/3)

ATAAGGTATAAAAGGGGGTTAAACGAGTTTAACATAACCAAATATCCGCGCTCATTCCATGGTTATTTTACATTTTCTTGTTTTTGATCAATTTTTCCAATTTAATTTTCTATTTTAGTGAAATTTTGTAGCATGAAAATTTCTCCTAAAATGTGTCAACTACCTATTTATTAGTATAAAAATATCATTAAATGGGAAAATTAAATGAAGCAGAAATATATAACTATAAAGAGGTATATTTACATTTTATGCTACAAAAAAGAATTATTTTTATTTGAATATTTTATCGAAGAAGAAATACCCTAATTACGGGCAATAAAAAACCGAACTCATCGAAATGAATTCGGCTTTCTGATTTGATGTTCTACTCTAAAAGTGCGGTTAATTTCTTACTCATAAATCTTGAAGATTTACTT  >  1/1992572‑1992987                                                                                                                                                                                                 |                                                                                                                                                                                                                                ataAGGTATAAAAGGGGGTTAAACGAGTTTAACATAACCAAATATCCGCGCTCATTCCATGGTTATTTTACATTTTCTTGTTTTTGATCAATTTTTCCAATTTAATTTTCTATTTTAGTGAAATTTTGTAGCATGAAAATTTCTCCTAAAATGTGTCAACTACCTATTTATTAGTATAAAAATATCATTAAAGGGGAAAATTAAATGAAGCAGAAATATATAAc                                                                                                                                                                                                  <  1:273020/224‑1 (MQ=255)                 ggTTAAACGAGTTTAACATAACCAAATATCCGCGCTCATTCCATGGTTATTTTACATTTTCTTGTTTTTGATCAATTTTTCCAATTTAATTTTCTATTTTAGTGAAATTTTGTAGCATGAAAATTTCTCCTAAAATGTGTCAACTACCTATTTATTAGTATAAAAATATCATTAAAGGGGAAAATTAAATGAAGCAGAAATATATAACTATAAAGAGGTATATTTACATTTTATGCTACAAAAAAGAatta                                                                                                                                                       >  1:813777/1‑251 (MQ=255)                                                           aTGGTTATTTTACATTTTCTTGTTTTTGATCAATTTTTCCAATTTAATTTTCTATTTTAGTGAAATTTTGTAGCATGAAAATTTCTCCTAAAATGTGTCAACTACCTATTTATTAGTATAAAAATATCATTAAAGGGGAAAATTAAATGAAGCAGAAATATATAACTATAAAGAGGTATATTTACATTTTATGCTACAAAAAAGAATTATTTTTATTTGAATATTTTATCGAAGAAGAAATACCCTAATTa                                                                                                             <  1:217793/251‑1 (MQ=255)                                                                                                                                                                      atttattAGTATAAAAATATCATTAAAGGGGAAAATTAAATGAAGCAGAAATATATAACTATAAAGAGGTATATTTACATTTTATGCTACAAAAAAGAATTATTTTTATTTGAATATTTTATCGAAGAAGAAATACCCTAATTACGGGCAATAAAAAACCGAACTCATCGAAATGAATTCGGCTTTCTGATTTGATGTTCTACTCTAAAAGTGCGGTTAATTTCTTACTCATAAATCTTGAAGATTTACtt  >  1:195623/1‑251 (MQ=255)                                                                                                                                                                      atttattAGTATAAAAATATCATTAAAGGGGAAAATTAAATGAAGCAGAAATATATAACTATAAAGAGGTATATTTACATTTTATGCTACAAAAAAGAATTATTTTTATTTGAATATTTTATCGAAGAAGAAATACCCTAATTACGGGCAATAAAAAACCGAACTCATCGAAATGAATTCGGCTTTCTGATTTGATGTTCTACTCTAAAAGTGCGGTTAATTTCTTACTCATAAATCTTGAAGATTTACtt  >  1:792396/1‑251 (MQ=255)                                                                                                                                                                              gTATAAAAATATCATTAAAGGGGAAAATTAAATGAAGCAGAAATATATAACTATAAAGAGGTATATTTACAt                                                                                                                                                                             <  1:485576/72‑1 (MQ=255)                                                                                                                                                                                                 |                                                                                                                                                                                                                                ATAAGGTATAAAAGGGGGTTAAACGAGTTTAACATAACCAAATATCCGCGCTCATTCCATGGTTATTTTACATTTTCTTGTTTTTGATCAATTTTTCCAATTTAATTTTCTATTTTAGTGAAATTTTGTAGCATGAAAATTTCTCCTAAAATGTGTCAACTACCTATTTATTAGTATAAAAATATCATTAAATGGGAAAATTAAATGAAGCAGAAATATATAACTATAAAGAGGTATATTTACATTTTATGCTACAAAAAAGAATTATTTTTATTTGAATATTTTATCGAAGAAGAAATACCCTAATTACGGGCAATAAAAAACCGAACTCATCGAAATGAATTCGGCTTTCTGATTTGATGTTCTACTCTAAAAGTGCGGTTAATTTCTTACTCATAAATCTTGAAGATTTACTT  >  1/1992572‑1992987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑