Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,951,908 T→C intergenic (‑52165/–) unknown ← / – tRNA‑Met‑CAT/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,951,9080TC100.0% 186.0 / NA 63intergenic (‑52165/–)unknown/–tRNA‑Met‑CAT/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (41/22);  total (41/22)

TCCGTTGCAATAACCGCATTACCCGCATTGGAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGTATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCATAAAGTGCGGTTGTTTAAAACA  >  1/1951674‑1952154
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      
tCCGTTGCAATAACCGCATTACCCGCATTGGAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACAt                                                                                                                                                                                                                                        <  1:393625/251‑1 (MQ=255)
     tGCAATAACCGCATTACCCGCATTGGAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTaa                                                                                                                                                                                                                                   <  1:357968/251‑1 (MQ=255)
      gCAATAACCGCATTACCCGCATTGGAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAat                                                                                                                                                                                                                                  >  1:359596/1‑251 (MQ=255)
          tAACCGCATTACCCGCATTGGAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATAc                                                                                                                                                                                                                              <  1:842513/251‑1 (MQ=255)
                   tACCCGCATTGGAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCg                                                                                                                                                                                                                     <  1:31454/251‑1 (MQ=255)
                             ggAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGGTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAac                                                                                                                                                                                                            >  1:185605/1‑250 (MQ=255)
                              gAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGGTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGGAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATTTTCGGTGGAACGGGATCTTACCCACCCGCATTTTAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAacca                                                                                                                                                                                                          >  1:247120/1‑251 (MQ=255)
                                        gTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGcg                                                                                                                                                                                                >  1:831418/1‑251 (MQ=255)
                                                                                  gTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAacac                                                                                                                                                       <  1:75728/250‑1 (MQ=255)
                                                                                   ttttGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACg                                                                                                                                                      <  1:689663/250‑1 (MQ=255)
                                                                                    tttGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTg                                                                                                                                                    <  1:655399/251‑1 (MQ=255)
                                                                                       ggCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTggg                                                                                                                                                  >  1:264911/1‑250 (MQ=255)
                                                                                            gtgATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAg                                                                                                                                                                                                  >  1:783583/1‑197 (MQ=255)
                                                                                            gtgATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGcg                                                                                                                                                                                                >  1:223375/1‑199 (MQ=255)
                                                                                             tgATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAac                                                                                                                                                         >  1:340509/1‑237 (MQ=255)
                                                                                             tgATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTaaaa                                                                                                                                           >  1:328600/1‑251 (MQ=255)
                                                                                                     cAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAg                                                                                                                                                                                                                       >  1:331311/1‑167 (MQ=255)
                                                                                                          gCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGa                                                                                                                               >  1:353845/1‑250 (MQ=255)
                                                                                                                 cTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTaa                                                                                                                       >  1:226647/1‑251 (MQ=255)
                                                                                                                        aCAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACggg                                                                                                                   >  1:797922/1‑248 (MQ=255)
                                                                                                                            tAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATaa                                                                                                            <  1:609693/251‑1 (MQ=255)
                                                                                                                                 gACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAg                                                                                                                                                                                                                                                <  1:720213/114‑1 (MQ=255)
                                                                                                                                 gACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAg                                                                                                                                                                                                                                                >  1:283200/1‑114 (MQ=255)
                                                                                                                                  aCATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAAc                                                                                                                                                               <  1:232438/194‑1 (MQ=255)
                                                                                                                                  aCATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGAt                                                                                                        <  1:264502/249‑1 (MQ=255)
                                                                                                                                    aTAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGa                                                                                                    >  1:292518/1‑251 (MQ=255)
                                                                                                                                    aTAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGa                                                                                                    >  1:585797/1‑251 (MQ=255)
                                                                                                                                      aaaGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTTCCCGCCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCGCCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAAc                                                                                                           <  1:733750/242‑1 (MQ=255)
                                                                                                                                              gtGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGc                                                                                                                  >  1:881256/1‑227 (MQ=255)
                                                                                                                                                   aTGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGAt                                                                                                        <  1:392410/232‑1 (MQ=255)
                                                                                                                                                     gACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATc                                                                                    >  1:328296/1‑250 (MQ=255)
                                                                                                                                                          gcagGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACTATTTGATAAAAACGAATTAATCCGATGa                                                                              >  1:45958/1‑251 (MQ=255)
                                                                                                                                                                  cGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGAttttt                                                                      >  1:726748/1‑251 (MQ=255)
                                                                                                                                                                     cTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAAc                                                                                                                                          >  1:500359/1‑180 (MQ=255)
                                                                                                                                                                          aTCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGc                                                                                                                  <  1:215115/199‑1 (MQ=255)
                                                                                                                                                                          aTCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTaaa                                                              >  1:451074/1‑251 (MQ=255)
                                                                                                                                                                            ccATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACg                                                            >  1:241240/1‑251 (MQ=255)
                                                                                                                                                                                tatttattCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATc                                                                                    <  1:655920/223‑1 (MQ=255)
                                                                                                                                                                                tatttattCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAAtg                                                        <  1:287628/251‑1 (MQ=255)
                                                                                                                                                                                 atttattCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAAtgt                                                       >  1:163851/1‑251 (MQ=255)
                                                                                                                                                                                 atttattCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACATTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAg                                                                                                                                                             >  1:842929/1‑149 (MQ=255)
                                                                                                                                                                                   ttattCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATgtgt                                                     <  1:712469/251‑1 (MQ=255)
                                                                                                                                                                                     attCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGc                                                                                                                  >  1:239262/1‑188 (MQ=255)
                                                                                                                                                                                          ctGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGc                                               >  1:123856/1‑250 (MQ=255)
                                                                                                                                                                                            gTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCAt                                            >  1:118002/1‑251 (MQ=255)
                                                                                                                                                                                                tGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAAtt                                        <  1:117333/251‑1 (MQ=255)
                                                                                                                                                                                                   tattatTGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTAt                                     <  1:522452/251‑1 (MQ=255)
                                                                                                                                                                                                     ttattGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATc                                    >  1:819988/1‑250 (MQ=255)
                                                                                                                                                                                                       attGATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAg                                 >  1:170316/1‑251 (MQ=255)
                                                                                                                                                                                                          gATCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGt                              >  1:483719/1‑251 (MQ=255)
                                                                                                                                                                                                           aTCTTCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGAtt                                                                                                       >  1:123046/1‑177 (MQ=255)
                                                                                                                                                                                                               tCGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGcc                         <  1:667869/251‑1 (MQ=255)
                                                                                                                                                                                                                cGGTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCa                        >  1:249780/1‑251 (MQ=255)
                                                                                                                                                                                                                 ggTGGAACGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCAt                       >  1:365708/1‑251 (MQ=255)
                                                                                                                                                                                                                      aaCGGGATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCATAAAg                   <  1:856593/250‑1 (MQ=255)
                                                                                                                                                                                                                          ggATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAac                                                                                                                                                         >  1:372478/1‑112 (MQ=255)
                                                                                                                                                                                                                          ggATCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCATAAAGTGCgg              >  1:892236/1‑251 (MQ=255)
                                                                                                                                                                                                                            aTCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCATAAAGTGCGgtt            >  1:756651/1‑251 (MQ=255)
                                                                                                                                                                                                                            aTCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCATAAAGTGCGgtt            >  1:11185/1‑251 (MQ=255)
                                                                                                                                                                                                                             tCGTACCCACCCGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCATAAAGTGCGgttg           <  1:390436/251‑1 (MQ=255)
                                                                                                                                                                                                                                  cccacccGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATcc                                   >  1:719633/1‑222 (MQ=255)
                                                                                                                                                                                                                                  cccacccGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATcc                                   >  1:166708/1‑222 (MQ=255)
                                                                                                                                                                                                                                      cccGCATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCATAAAGTGCGGTTGTTTAAAaca  >  1:481800/1‑251 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      
TCCGTTGCAATAACCGCATTACCCGCATTGGAAGAGGCAGGTACATCGGATGCCGATGCGGCGGTTTGTTCGGTTGTTACAGGTTTTGGCGTGTGATAATCCAGTTGCCATTGCTGATAAACAATAAAAGACATAAAGAGTAGTGCAATGACCAGCAGGCCTCGTCTTGAATCCATTATTTATTCTCTGTTTTGTTATTATTGATCTTCGGTGGAACGGGATCGTACCCACCCGTATTTAAAGGATGACATTTTAATATACGTTTAAGCGTAAGCCAACCACCTTTTAGCGTGCCGTGCGTTTTTACCGCCTCAATGCCATAACAGGAACACGTGGGCGTAAAACGGCAACGCGGACCGATTAACGGGCTGATAACGATTTGATAAAAACGAATTAATCCGATGAGGATTTTTGCGCTAAACGAATGTGTCGTTGCCATAATTTATCCAGCGTTTGCCATAAAGTGCGGTTGTTTAAAACA  >  1/1951674‑1952154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑