Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,880,290 A→G intergenic (‑44627/+3339) unknown ← / ← unknown tRNA‑Lys‑TTT/tRNA‑Ser‑TGA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,880,2900AG100.0% 91.6 / NA 32intergenic (‑44627/+3339)unknown/unknowntRNA‑Lys‑TTT/tRNA‑Ser‑TGA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (12/20);  total (12/20)

GACCGGATATTCTTTTCCATCTTCCCATTTCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATACCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGGCACTTGATAATCAAGAATAAAACGTTCTATTTCAAAAATATTTGTACTAAATAATAAC  >  1/1880052‑1880488
                                                                                                                                                                                                                                                |                                                                                                                                                                                                      
gACCGGATATTCTTTTCCATCTTCCCATTTCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTa                                                                                                                                                                                            >  1:126847/1‑251 (MQ=255)
  ccGGATATTCTTTTCCATCTTCCCATTTCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTaac                                                                                                                                                                                          <  1:734108/251‑1 (MQ=255)
        atTCTTTTCCATCTTCCCATTTCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCATAAAAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTaacaa                                                                                                                                                                                        >  1:775488/1‑249 (MQ=255)
            ttttCCATCTTCCCATTTCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGAtt                                                                                                                                                                                <  1:157456/251‑1 (MQ=255)
            ttttCCATCTTCCCATTTCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGAtt                                                                                                                                                                                <  1:876671/251‑1 (MQ=255)
                 cATCTTCCCATTTCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGt                                                                                                                                                                           <  1:575704/251‑1 (MQ=255)
                            ttCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGaaaaa                                                                                                                                                                >  1:107050/1‑251 (MQ=255)
                             tCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAAt                                                                                                                                                               >  1:862637/1‑251 (MQ=255)
                                            ttCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGaa                                                                                                                                                <  1:23222/251‑1 (MQ=255)
                                                                               gCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAaacaa                                                                                                               >  1:789829/1‑249 (MQ=255)
                                                                               gCATGGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTaac                                                                                                                                                                                          <  1:427045/174‑1 (MQ=255)
                                                                                         cAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCatgtaa                                                                                                                                                        <  1:61608/198‑1 (MQ=255)
                                                                                          aT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCTATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGAc                                                                                                  <  1:516531/251‑1 (MQ=255)
                                                                                                          tGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTacac                                                                                    <  1:262791/251‑1 (MQ=255)
                                                                                                           gCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTacac                                                                                    >  1:92842/1‑250 (MQ=255)
                                                                                                                                     ttttCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGacac                                                         <  1:600621/251‑1 (MQ=255)
                                                                                                                                                       ccTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGACACTTGATAAt                                                 >  1:861486/1‑241 (MQ=255)
                                                                                                                                                                          ataataatGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGAtt                                                                                                                                                                                >  1:783271/1‑95 (MQ=255)
                                                                                                                                                                          ataataatGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTac                                                                                      <  1:538940/185‑1 (MQ=255)
                                                                                                                                                                          ataataatGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAgac                                                           >  1:559257/1‑210 (MQ=255)
                                                                                                                                                                          ataataatGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGACACTTGATAATCa                                               <  1:713253/224‑1 (MQ=255)
                                                                                                                                                                                       ccATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTaacaa                                                                                                                                                                                        <  1:481320/74‑1 (MQ=255)
                                                                                                                                                                                       ccATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGACACTTGATAATCAAGAATAAAACGTTCTATTTCAAAAATATTTGTACTAaata       >  1:556311/1‑251 (MQ=255)
                                                                                                                                                                                         aTCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATc                                                                                                                                           <  1:15923/117‑1 (MQ=255)
                                                                                                                                                                                         aTCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTacac                                                                                    <  1:709352/172‑1 (MQ=255)
                                                                                                                                                                                         aTCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAAtc                                                                 <  1:277514/191‑1 (MQ=255)
                                                                                                                                                                                         aTCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGACACTTGATAATCAAGAATAAAACGTTCTATTTCAAAAATATTTGTACTAaataat     >  1:460817/1‑251 (MQ=255)
                                                                                                                                                                                            ttACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGACACTTGATAATCAAGAATAAAACGTTCTATTTCAAAAATATTTGTACTAAATAATAAc  <  1:688774/251‑1 (MQ=255)
                                                                                                                                                                                                                       cTTATTTTAAAATAAAAAATAAGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATaa                                                                          <  1:788578/152‑1 (MQ=255)
                                                                                                                                                                                                                                     aaaaataaGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAAtct                                                                >  1:628875/1‑148 (MQ=255)
                                                                                                                                                                                                                                     aaaaataaGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGACACTTGATAATCAAGAATAAAACGTTCTATTTCAAAAATATTTGTACTAAAtaataa   <  1:757287/209‑1 (MQ=255)
                                                                                                                                                                                                                                       aaataaGATGCCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGAc                                                                                                  <  1:820228/112‑1 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                      
GACCGGATATTCTTTTCCATCTTCCCATTTCATAGTGTTGGTGGTTCTGGCGCAGGAACGAATCAAAAAGCCTTGTTTGGCATTGGAGTCAT‑‑AAAAAAGAACGGTGCGATAATTTTCCGGATGAATACCTTTTTTCATTTTTCTGCAATCCTTATTTTTTAGTGAAAAATAATAATGCGCGCCATCTTACACAAAAAAATCCATAGAAGCAAACTTATTTTAAAATAAAAAATAAGATACCGAAAAAAGTAACAACTTAGATTGGGGTAATAAGAAAAATCATGTAATGTACGAAAAATCCACCGAGTTAGTTCTCATAGAAAAACAACTTTATTTTTGACCGCACTTTTTACACATCTTCATAAGTACGAATCTCAGGCACTTGATAATCAAGAATAAAACGTTCTATTTCAAAAATATTTGTACTAAATAATAAC  >  1/1880052‑1880488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑