Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,820,987 C→T intergenic (+39087/+14397) unknown → / ← unknown tRNA‑Asp‑GTC/tRNA‑Lys‑CTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,820,9870CT100.0% 183.6 / NA 64intergenic (+39087/+14397)unknown/unknowntRNA‑Asp‑GTC/tRNA‑Lys‑CTT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (36/28);  total (36/28)

ATGTAAAAAAGGCAATCTGTCAACTGTTTTGTTCGCAGTTCTTACCTTTAATCCAAGTGATTTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCCGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGGGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCGCACACACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATAATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTAT  >  1/1820743‑1821226
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                               
aTGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAat                                                                                                                                                                                                                                           <  1:421052/251‑1 (MQ=255)
 tGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAata                                                                                                                                                                                                                                          <  1:501623/251‑1 (MQ=255)
    aaaaaaGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGc                                                                                                                                                                                                                                       <  1:31942/251‑1 (MQ=255)
    aaaaaaGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGc                                                                                                                                                                                                                                       <  1:7619/251‑1 (MQ=255)
                                     gTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCa                                                                                                                                                                                                      >  1:184872/1‑251 (MQ=255)
                                            cttttAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTg                                                                                                                                                                                               <  1:494075/249‑1 (MQ=255)
                                              tttAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCt                                                                                                                                                                                             <  1:8840/251‑1 (MQ=255)
                                                          gatcttGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCg                                                                                                                                                                                 >  1:522335/5‑251 (MQ=255)
                                                                           ccATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGttatt                                                                                                                                                                >  1:372678/1‑251 (MQ=255)
                                                                                  gTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACaaa                                                                                                                                                                                                                                            <  1:469498/168‑1 (MQ=255)
                                                                                      ggTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGc                                                                                                                                                                                                       >  1:216369/1‑201 (MQ=255)
                                                                                            gcccatgcccatCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAAt                                                                                                                                                                                                                                  <  1:762362/168‑1 (MQ=255)
                                                                                            gcccatgcccatCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGTCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCg                                                                                                                                               >  1:600194/1‑251 (MQ=255)
                                                                                                     catCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCag                                                                                                                                                                                                     >  1:721383/1‑188 (MQ=255)
                                                                                                     catCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCg                                                                                                                                               >  1:430540/1‑242 (MQ=255)
                                                                                                          atatCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACg                                                                                                                                   >  1:160945/1‑249 (MQ=255)
                                                                                                              cAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTAc                                                                                                                             <  1:86095/251‑1 (MQ=255)
                                                                                                                           tATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTA‑‑‑‑TCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAAt                                                                                                                                                   >  1:536392/1‑212 (MQ=255)
                                                                                                                              ttcttcAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAAcc                                                                                                             <  1:217983/251‑1 (MQ=255)
                                                                                                                                cttcAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCa                                                                                                            >  1:757729/1‑250 (MQ=255)
                                                                                                                                  tcagggTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTg                                                                                                         <  1:808977/248‑1 (MQ=255)
                                                                                                                                     gggTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTtattat                                                                                                                                                              <  1:848639/195‑1 (MQ=255)
                                                                                                                                     gggTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAAt                                                                                                                                                   >  1:793904/1‑206 (MQ=255)
                                                                                                                                         tAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTg                                                                                                  <  1:892827/251‑1 (MQ=255)
                                                                                                                                              gAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAaat                                                                                              >  1:217165/1‑250 (MQ=255)
                                                                                                                                                 atatTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCgg                                                                                                                          >  1:629510/1‑219 (MQ=255)
                                                                                                                                                  tattatGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAatcata                                                                                          >  1:774348/1‑250 (MQ=255)
                                                                                                                                                   attatGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTgg                                                                                                                                                           >  1:531082/1‑184 (MQ=255)
                                                                                                                                                   attatGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACg                                                                                        >  1:629577/1‑251 (MQ=255)
                                                                                                                                                    ttatGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGc                                                                                                                                                                                                                       <  1:580774/123‑1 (MQ=255)
                                                                                                                                                    ttatGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAAc                                                                                                                                                                                                                <  1:758938/130‑1 (MQ=255)
                                                                                                                                                      atGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTAcc                                                                                                                            <  1:272801/212‑1 (MQ=255)
                                                                                                                                                          tatTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAata                                                                                 >  1:574446/1‑251 (MQ=255)
                                                                                                                                                          tatTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGCAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAata                                                                                 >  1:838708/1‑251 (MQ=255)
                                                                                                                                                              gAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCAt                                                                             >  1:809132/1‑251 (MQ=255)
                                                                                                                                                                  cAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACt                                                                                     >  1:719659/1‑239 (MQ=255)
                                                                                                                                                                    gTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGc                                                                                                                                                                                                       <  1:561366/123‑1 (MQ=255)
                                                                                                                                                                    gTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGAc                                                                        <  1:255366/250‑1 (MQ=255)
                                                                                                                                                                        ttCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCAc                                                                                                           <  1:75957/211‑1 (MQ=255)
                                                                                                                                                                         tCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGc                                                                                                                                                                                                       <  1:31145/118‑1 (MQ=255)
                                                                                                                                                                         tCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCg                                                                  >  1:467427/1‑251 (MQ=255)
                                                                                                                                                                              tGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTa                                                                                                                                                                                                          >  1:733914/1‑110 (MQ=255)
                                                                                                                                                                              tGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTtattat                                                                                                                                                              >  1:60710/1‑154 (MQ=255)
                                                                                                                                                                                 cTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGc                                                                                                                                                                                                                       <  1:255356/94‑1 (MQ=255)
                                                                                                                                                                                      gagCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCa                                                                              <  1:754509/224‑1 (MQ=255)
                                                                                                                                                                                            gATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTAc                                                                                                                             <  1:224200/173‑1 (MQ=255)
                                                                                                                                                                                             aTTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACt                                              <  1:283002/251‑1 (MQ=255)
                                                                                                                                                                                                    tttttCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGacgaa                                       >  1:549853/1‑251 (MQ=255)
                                                                                                                                                                                                               gTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAat                                                                                                                                                                                                                                           <  1:604992/44‑1 (MQ=255)
                                                                                                                                                                                                               gTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAagag                                                                                                                                                                           >  1:673980/1‑108 (MQ=255)
                                                                                                                                                                                                               gTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGagaagaaga                            >  1:818073/1‑251 (MQ=255)
                                                                                                                                                                                                                 ccATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCa                                                  >  1:536853/1‑227 (MQ=255)
                                                                                                                                                                                                                 ccATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACa                          >  1:647506/1‑251 (MQ=255)
                                                                                                                                                                                                                 ccATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACa                          >  1:265885/1‑251 (MQ=255)
                                                                                                                                                                                                                   aTTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCa                                                                                                                                                                                                      >  1:772327/1‑77 (MQ=255)
                                                                                                                                                                                                                    ttACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCt                                                                                                                                 >  1:303037/1‑145 (MQ=255)
                                                                                                                                                                                                                    ttACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATaa                       >  1:842948/1‑251 (MQ=255)
                                                                                                                                                                                                                      aCATATCCGGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAgg                     >  1:352874/1‑251 (MQ=255)
                                                                                                                                                                                                                       cATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGc                    <  1:244632/251‑1 (MQ=255)
                                                                                                                                                                                                                                aaaaaCAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGAc            <  1:159104/250‑1 (MQ=255)
                                                                                                                                                                                                                                       gTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCttt    >  1:539895/1‑251 (MQ=255)
                                                                                                                                                                                                                                        tGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCt      <  1:555621/248‑1 (MQ=255)
                                                                                                                                                                                                                                         gATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTAt  >  1:375610/1‑251 (MQ=255)
                                                                                                                                                                                                                                          aTTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTg              >  1:139674/1‑238 (MQ=255)
                                                                                                                                                                                                                                              cacacatacaAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTc                                                                                                                                                         <  1:470924/93‑1 (MQ=255)
                                                                                                                                                                                                                                              cacacatacaAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTAcc       >  1:316218/3‑241 (MQ=255)
                                                                                                                                                                                                                                                cacatacaAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTg              >  1:160435/1‑232 (MQ=255)
                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                               
ATGTAAAAAAGGCAATCTGTCAACTGTTTTGTTCGCAGTTCTTACCTTTAATCCAAGTGATTTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCCGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGGGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCGCACACACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCTAACGAATTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATAATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTAT  >  1/1820743‑1821226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑