Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,820,804 T→C intergenic (+38904/+14580) unknown → / ← unknown tRNA‑Asp‑GTC/tRNA‑Lys‑CTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,820,8040TC100.0% 134.9 / NA 44intergenic (+38904/+14580)unknown/unknowntRNA‑Asp‑GTC/tRNA‑Lys‑CTT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (16/28);  total (16/28)

CAATAGATGCGCGTGATGCAATTAAAATCACCTTGCTTTGATAACGTTCTTCAAATTCATTTTTGTCTAAAACAATAGGATTTTTTTGAATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTTAATAAAATAAAGTGTTCACCATCATCACGCCAAGCCAATGCCGGTAAATGTAAAAAAGGCAATCTGTCAACTGTTTTGTTCGCAGTTCTTACCTTTAATCCAAGTGATTTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCCGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGGGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCGCACACACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCT  >  1/1820562‑1821039
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                           
cAATAGATGCGCGTGACGCAACTAAAATCACCTTGCTTTGATAACGTTCTTCAAATTCATTTTTGTCTAAAACAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTtgctg                                                                                                                                                                                                                                       <  1:339897/249‑1 (MQ=255)
                         aaTCACCTTGCTTTGATAACGTTCTTCAAATTCATTTTTGTCTAAAACAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAgcc                                                                                                                                                                                                            <  1:183974/251‑1 (MQ=255)
                          aTCACCTTGCTTTGATAACGTTCTTCAAATTCATTTTTGTCTAAAACAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAgccc                                                                                                                                                                                                           <  1:622500/251‑1 (MQ=255)
                               cTTGCTTTGATAACGTTCTTCAAATTCATTTTTGTCTAAAACAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAgcccatgcc                                                                                                                                                                                                      <  1:217913/251‑1 (MQ=255)
                                                cttcAAATTCA‑TTTTGTCTAAAACAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTAt                                                                                                                                                                                    >  1:611760/1‑251 (MQ=255)
                                                         cATTTTTGTCTAAAACAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTAtt                                                                                                                                                                            >  1:875279/1‑251 (MQ=255)
                                                                gTCTAAAACAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTc                                                                                                                                                                                                                >  1:313598/1‑208 (MQ=255)
                                                                     aaaCAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAgcccatgcc                                                                                                                                                                                                      >  1:148087/1‑213 (MQ=255)
                                                                        cAATAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAAtt                                                                                                                                                             >  1:379943/1‑251 (MQ=255)
                                                                         aaTAGGATTTTTTTGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTg                                                                                                                                                            <  1:28126/251‑1 (MQ=255)
                                                                                    tttGCATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGa                                                                                                                                                 <  1:456801/251‑1 (MQ=255)
                                                                                              aTCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGc                                                                                                                                         <  1:899261/249‑1 (MQ=255)
                                                                                               tCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTatat                                                                                                                                                                                             <  1:843933/196‑1 (MQ=255)
                                                                                               tCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTAAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAAtt                                                                                                                                                             <  1:320068/228‑1 (MQ=255)
                                                                                                  aaaaTGAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTAc                                                                                                                                   <  1:146660/251‑1 (MQ=255)
                                                                                                       gAGGTAACGATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAgcccatgcc                                                                                                                                                                                                      <  1:300891/179‑1 (MQ=255)
                                                                                                               gATCGGTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCTTTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGa                                                                                                                      >  1:566830/1‑251 (MQ=255)
                                                                                                                    gTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTc                                                                                                                                                                                                                <  1:240188/156‑1 (MQ=255)
                                                                                                                    gTTTCTTGATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATc                                                                                                                                                                                                  <  1:889672/170‑1 (MQ=255)
                                                                                                                           gATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATc                                                                                                                                                                                                  <  1:889977/163‑1 (MQ=255)
                                                                                                                           gATCTATTTTCAATAAAATAAAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCta                                                                                                                                                                                                >  1:799754/1‑165 (MQ=255)
                                                                                                                                      aataaaataaAGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCtg                                                                                               <  1:310667/251‑1 (MQ=255)
                                                                                                                                          aaataaaGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAg                                                                                                                    >  1:481630/1‑226 (MQ=255)
                                                                                                                                            ataaaGTGGTCACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTatat                                                                                                                                                                                             <  1:502307/151‑1 (MQ=255)
                                                                                                                                                      cACCATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACatat                                                                               >  1:262410/1‑251 (MQ=255)
                                                                                                                                                        ccATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATcc                                                                             <  1:677991/251‑1 (MQ=255)
                                                                                                                                                        ccATCATCACGCCAAGCCAATACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATc                                                                              >  1:201576/1‑250 (MQ=255)
                                                                                                                                                                      agccaaTACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGatat                                                                                                                                              >  1:745969/1‑172 (MQ=255)
                                                                                                                                                                      agccaaTACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTAc                                                                                   <  1:470863/231‑1 (MQ=255)
                                                                                                                                                                      agccaaTACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGAt                                                               >  1:480436/1‑251 (MQ=255)
                                                                                                                                                                       gccaaTACCGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTAttt                                                                                                                                                                           >  1:198015/1‑142 (MQ=255)
                                                                                                                                                                              ccGGTAAATGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAatat                                                                                                                                                      <  1:421318/156‑1 (MQ=255)
                                                                                                                                                                                     aTGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGcc                                                                                                                         <  1:56080/178‑1 (MQ=255)
                                                                                                                                                                                     aTGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAat                                                <  1:421052/251‑1 (MQ=255)
                                                                                                                                                                                      tGTAAAAAAGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAata                                               <  1:501623/251‑1 (MQ=255)
                                                                                                                                                                                         aaaaaaGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGc                                            <  1:7619/251‑1 (MQ=255)
                                                                                                                                                                                         aaaaaaGGTAATCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGc                                            <  1:31942/251‑1 (MQ=255)
                                                                                                                                                                                              aggtaaTCTATCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAAt                                                                                                                                                                                        >  1:245187/5‑106 (MQ=255)
                                                                                                                                                                                                    tctatCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAAc                                                                     <  1:129914/211‑1 (MQ=255)
                                                                                                                                                                                                      tatCAATTGTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAat                                                                                                                                                        <  1:858693/128‑1 (MQ=255)
                                                                                                                                                                                                              gTTTTGTTCGTAGTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCaa                                                                                                                             >  1:391153/1‑149 (MQ=255)
                                                                                                                                                                                                                          gTTCTTACTTTTAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCa           >  1:184872/1‑251 (MQ=255)
                                                                                                                                                                                                                                 cttttAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTg    <  1:494075/249‑1 (MQ=255)
                                                                                                                                                                                                                                   tttAATCCAAGTGATCTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCAGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGAGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCACACATACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCt  <  1:8840/251‑1 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                           
CAATAGATGCGCGTGATGCAATTAAAATCACCTTGCTTTGATAACGTTCTTCAAATTCATTTTTGTCTAAAACAATAGGATTTTTTTGAATTAGATCAAAAATGAGGTAACGATCGGTTTCTTGATCTATTTTTAATAAAATAAAGTGTTCACCATCATCACGCCAAGCCAATGCCGGTAAATGTAAAAAAGGCAATCTGTCAACTGTTTTGTTCGCAGTTCTTACCTTTAATCCAAGTGATTTTGCTGCAAGCAACCATTTAGTTTGGTTCAGCCCATGCCCATCTATATCAAATTTATGTTTTATTTCTTCCGGGTTAATTGAAATATTATGATATTGAGCCAGTACTTCCAATGCCTGAAGGGCAAGATTAGTATTTTTCTGTGAGTCCATTACATATCCTGAAAAACAGTGATTCCGCACACACAAATATGCGGAATCACTAAAAAGCCAATAACTCATTAAGCAGTAGTTGCT  >  1/1820562‑1821039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑