Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,818,892 C→T intergenic (+36992/+16492) unknown → / ← unknown tRNA‑Asp‑GTC/tRNA‑Lys‑CTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,818,8920CT100.0% 183.7 / NA 65intergenic (+36992/+16492)unknown/unknowntRNA‑Asp‑GTC/tRNA‑Lys‑CTT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (30/35);  total (30/35)

TGCATTTGATACAGGTGTTTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAACCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTTCCTTTAATTTACTTGTAATTGGTGTAAATAAGAGTAAAGACCTTTTTCATCTTTCAGTAATTCCTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATAATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACAGTACGATTTTGGCAAATTTTATGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCTTGGGTTATTGACTAGTGCCCTTGCTATCGCGATCCGTTGACGTTGTCCTCCGGAC  >  1/1818650‑1819138
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                        
tgCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCt                                                                                                                                                                                                                                                   <  1:187489/250‑1 (MQ=255)
     gctatggcaaaaccaccttaatttCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGc                                                                                                                                                                                                                                                <  1:637580/226‑1 (MQ=255)
        aTACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGtt                                                                                                                                                                                                                                          >  1:221448/1‑251 (MQ=255)
                    cAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCa                                                                                                                                                                                                                               >  1:111049/1‑250 (MQ=255)
                    cAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCa                                                                                                                                                                                                                               >  1:550636/1‑250 (MQ=255)
                     aattaattCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCAcc                                                                                                                                                                                                                             <  1:844384/251‑1 (MQ=255)
                      attaattCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCAc                                                                                                                                                                                                                              >  1:768445/1‑249 (MQ=255)
                       ttaattCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCtt                                                                                                                                                                                                                           <  1:361004/251‑1 (MQ=255)
                                          cAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACaatga                                                                                                                                                                                                            <  1:540651/247‑3 (MQ=255)
                                          cAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGc                                                                                                                                                                                                         <  1:470762/250‑1 (MQ=255)
                                                       tCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCAtttttt                                                                                                                                                                                           <  1:156740/251‑1 (MQ=255)
                                                           cTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAg                                                                                                                                                                                                   >  1:426634/1‑239 (MQ=255)
                                                                    taatcGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCAcc                                                                                                                                                                                                                             <  1:870405/200‑1 (MQ=255)
                                                                             aaTCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGc                                                                                                                                                                       <  1:209156/249‑1 (MQ=255)
                                                                                      gTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAgg                                                                                                                                                                               >  1:303518/1‑232 (MQ=255)
                                                                                       tttACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGcac                                                                                                                                                           <  1:629863/251‑1 (MQ=255)
                                                                                                            aTTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTACATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAatgatg                                                                                                                                                                                                          <  1:570660/183‑1 (MQ=255)
                                                                                                                    cGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCGGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatat                                                                                                                              >  1:726477/1‑251 (MQ=255)
                                                                                                                    cGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatat                                                                                                                              >  1:874640/1‑251 (MQ=255)
                                                                                                                      tttttATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatatt                                                                                                                             <  1:54323/250‑1 (MQ=255)
                                                                                                                      tttttATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTAGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatatta                                                                                                                            >  1:406267/1‑251 (MQ=255)
                                                                                                                                         catcatACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATa                                                                                                                                                                <  1:666290/196‑1 (MQ=255)
                                                                                                                                         catcatACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAg                                                                                                         <  1:164781/251‑1 (MQ=255)
                                                                                                                                            catACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGAtt                                                                                                      <  1:829776/251‑1 (MQ=255)
                                                                                                                                             atACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAgg                                                                                                                                                                               >  1:9122/1‑177 (MQ=255)
                                                                                                                                             atACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAgg                                                                                                                                                                               >  1:699597/1‑177 (MQ=255)
                                                                                                                                             atACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatattatgca                                                                                                                        <  1:706649/232‑1 (MQ=255)
                                                                                                                                              tACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatattatgc                                                                                                                         >  1:779986/1‑230 (MQ=255)
                                                                                                                                                     ccAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCa                                                                                              <  1:584052/250‑1 (MQ=255)
                                                                                                                                                                                   ccTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCatcaaaaatcaaaa                                                             >  1:315439/1‑251 (MQ=255)
                                                                                                                                                                                   ccTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCatcaaaaatcaaaa                                                             >  1:474813/1‑251 (MQ=255)
                                                                                                                                                                                    cTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATc                                                                                                                                                                                                     <  1:313214/116‑1 (MQ=255)
                                                                                                                                                                                     tttAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAaaaatcaaaatc                                                           <  1:141124/251‑1 (MQ=255)
                                                                                                                                                                                              cTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGc                                                                                                                                                             >  1:92896/1‑146 (MQ=255)
                                                                                                                                                                                                tGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAaaaatcaaaatc                                                           >  1:246296/1‑240 (MQ=255)
                                                                                                                                                                                                  tAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTg                                               <  1:522639/250‑1 (MQ=255)
                                                                                                                                                                                                  tAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGa                                              >  1:392369/1‑251 (MQ=255)
                                                                                                                                                                                                   aaTTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGAc                                             <  1:165265/251‑1 (MQ=255)
                                                                                                                                                                                                        gtgtAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGAt                                                                                                                                                   <  1:306438/146‑1 (MQ=255)
                                                                                                                                                                                                        gtgtAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatattatgc                                                                                                                         >  1:108611/1‑172 (MQ=255)
                                                                                                                                                                                                        gtgtAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCt                                                                               <  1:310021/214‑1 (MQ=255)
                                                                                                                                                                                                          gtAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGtt                                                                                  >  1:242401/1‑209 (MQ=255)
                                                                                                                                                                                                          gtAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCatcaa                                                                      >  1:842927/1‑219 (MQ=255)
                                                                                                                                                                                                           tAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGACTAATGccc                                     <  1:562634/251‑1 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCAcc                                                                                                                                                                                                                             <  1:460018/68‑1 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGt                                                                                                                                                                                      >  1:694849/1‑107 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCgg                                                                                                                                                                            <  1:77726/117‑1 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatattatgc                                                                                                                         >  1:171695/1‑168 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatatt                                                                                                                             >  1:748995/1‑164 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTttgtgcatatt                                                                                                                             <  1:304968/164‑1 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTc                                                                                                           >  1:662542/1‑182 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATc                                                                                               <  1:894447/194‑1 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑tc                                                                           >  1:254269/1‑212 (MQ=255)
                                                                                                                                                                                                            aaaTAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGAc                                             <  1:147913/242‑1 (MQ=255)
                                                                                                                                                                                                               taatagTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCAtttttt                                                                                                                                                                                           >  1:31017/5‑99 (MQ=255)
                                                                                                                                                                                                               taatagTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGACTAATGCCCTTg                                  >  1:758391/5‑250 (MQ=255)
                                                                                                                                                                                                                aatagTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCTTCTCATCAAAAATCAAAATCCGTGGGTTATTGACTAATGCCCTTg                                  <  1:681537/248‑1 (MQ=255)
                                                                                                                                                                                                                   agTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGGGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGACTAATGCCCTTGCTAt                              >  1:187141/1‑250 (MQ=255)
                                                                                                                                                                                                                          gccTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGACTAATGCCCTTGCTATCGCGATc                       <  1:120910/249‑1 (MQ=255)
                                                                                                                                                                                                                                   aTCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGACTAATGCCCTTGCTATCGCGATCCGTTGGCGtt             >  1:51108/1‑251 (MQ=255)
                                                                                                                                                                                                                                    tCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATc                                                                                                                                                                                                     >  1:637293/1‑68 (MQ=255)
                                                                                                                                                                                                                                    tCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTaa                                                                                                 <  1:244310/168‑1 (MQ=255)
                                                                                                                                                                                                                                      tttCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTg                                               <  1:129918/214‑1 (MQ=255)
                                                                                                                                                                                                                                              aTTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGACTAATGCCCTTGCTATCGCGATCCGTTGGCGTTGTCCTCCGGAc  <  1:160093/251‑1 (MQ=255)
                                                                                                                                                                                                                                              aTTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACGGTACGATCTTGGCAAATTTTGTGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCGTGGGTTATTGACTAATGCCCTTGCTATCGCGATCCGTTGGCGTTGTCCTCCGGAc  <  1:45077/251‑1 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                        
TGCATTTGATACAGGTGTTTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAACCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTTCCTTTAATTTACTTGTAATTGGTGTAAATAAGAGTAAAGACCTTTTTCATCTTTCAGTAATTCCTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATAATGCGATCAGCATTTTTTACAGTAGAAAGGCGGTGAGCAATGATAAGCACAGTACGATTTTGGCAAATTTTATGCATATTATGCATAATGATATTTTCAGATTCGTAATCAAGTGCACTGGTTGCT‑‑TCATCAAAAATCAAAATCCTTGGGTTATTGACTAGTGCCCTTGCTATCGCGATCCGTTGACGTTGTCCTCCGGAC  >  1/1818650‑1819138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑