Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,818,721 C→T intergenic (+36821/+16663) unknown → / ← unknown tRNA‑Asp‑GTC/tRNA‑Lys‑CTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,818,7210CT100.0% 252.0 / NA 83intergenic (+36821/+16663)unknown/unknowntRNA‑Asp‑GTC/tRNA‑Lys‑CTT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (41/42);  total (41/42)

CTTTCACAAAAATATGTTTAACCAATGAATTTTCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCAAATTTTCCTGAAGCCGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTTTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAACCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTTCCTTTAATTTACTTGTAATTGGTGTAAATAAGAGTAAAGACCTTTTTCATCTTTCAGTAATTCCTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATAATGCGATCAGCATTTTTT  >  1/1818478‑1818955
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                          
ctTTCACAAAAATATCTTTAACCAATGAATTTTCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGaa                                                                                                                                                                                                                                     >  1:642871/1‑251 (MQ=255)
        aaaaTATCTTTAACCAATGAATTTTCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTg                                                                                                                                                                                                                             <  1:401258/251‑1 (MQ=255)
             atctttAACCAATGAATTTTCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTa                                                                                                                                                                                                                         >  1:41426/4‑250 (MQ=255)
              tctttAACCAATGAATTTTCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACg                                                                                                                                                                                                                       <  1:447188/249‑1 (MQ=255)
              tctttAACCAATGAATTTTCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACg                                                                                                                                                                                                                       >  1:256218/3‑251 (MQ=255)
                tttAACCAATGAATTTTCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGaa                                                                                                                                                                                                                     <  1:373488/251‑1 (MQ=255)
                             ttttCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGttt                                                                                                                                                                                                         >  1:301311/1‑250 (MQ=255)
                             ttttCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGttt                                                                                                                                                                                                         >  1:586684/1‑250 (MQ=255)
                                 cAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCAtt                                                                                                                                                                                                     >  1:63524/1‑250 (MQ=255)
                                       gTTTAATTTCTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTc                                                                                                                                                                                                    <  1:798591/245‑1 (MQ=255)
                                                cTTTGCTTCTCCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATaa                                                                                                                                                                                     <  1:813005/251‑1 (MQ=255)
                                                       tctcCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGaaa                                                                                                                                                                              >  1:735535/1‑251 (MQ=255)
                                                        ctcCCGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAg                                                                                                                                                                             >  1:823944/1‑251 (MQ=255)
                                                          cccGCTTAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTtat                                                                                                                                                                                       <  1:135867/239‑1 (MQ=255)
                                                                tAGTGCGAATTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAGTGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCAcatcat                                                                                                                                                                     <  1:110157/251‑1 (MQ=255)
                                                                   tgcgaaTTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATAc                                                                                                                                                                   <  1:98365/246‑1 (MQ=255)
                                                                   tgcgaaTTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACa                                                                                                                                                                  <  1:338307/247‑1 (MQ=255)
                                                                     cgaaTTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACaa                                                                                                                                                                 <  1:877449/248‑1 (MQ=255)
                                                                        aTTTTCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGcac                                                                                                                                                                          >  1:795241/1‑238 (MQ=255)
                                                                           ttCCTGAAGCGGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGaa                                                                                                                                                                                                                     >  1:23595/1‑192 (MQ=255)
                                                                                            aTAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTCACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTAt                                                                                                                                         <  1:188270/251‑1 (MQ=255)
                                                                                              aaTTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTAtcg                                                                                                                                       >  1:648822/1‑251 (MQ=255)
                                                                                                tttCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACg                                                                                                                                                                                              <  1:480288/194‑1 (MQ=255)
                                                                                                tttCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACa                                                                                                                                                                  >  1:14149/1‑222 (MQ=255)
                                                                                                tttCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGcc                                                                                                                                                      <  1:320094/234‑1 (MQ=255)
                                                                                                tttCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTAtcgtt                                                                                                                                     >  1:889431/1‑251 (MQ=255)
                                                                                                   ccACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATAc                                                                                                                                                                   >  1:159362/1‑218 (MQ=255)
                                                                                                    cacaTTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTAtcgttcgtc                                                                                                                                 <  1:680413/251‑2 (MQ=255)
                                                                                                        ttGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGaa                                                                                                                                                                               <  1:755635/201‑1 (MQ=255)
                                                                                                        ttGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCtt                                                                                                                             >  1:170514/1‑251 (MQ=255)
                                                                                                          gCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTtat                                                                                                                                                                                       >  1:401565/1‑191 (MQ=255)
                                                                                                          gCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATaa                                                                                                                                                                                     >  1:659406/1‑193 (MQ=255)
                                                                                                          gCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATAc                                                                                                                                                                   <  1:575964/211‑1 (MQ=255)
                                                                                                          gCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATAc                                                                                                                                                                   <  1:120341/211‑1 (MQ=255)
                                                                                                          gCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATAc                                                                                                                                                                   <  1:37891/211‑1 (MQ=255)
                                                                                                          gCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTa                                                                                                                           >  1:332690/1‑251 (MQ=255)
                                                                                                          gCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTa                                                                                                                           >  1:203039/1‑251 (MQ=255)
                                                                                                              aaGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAAttt                                                                                                                       <  1:376707/251‑1 (MQ=255)
                                                                                                                gATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGc                                                                                                                                                                            >  1:203068/1‑196 (MQ=255)
                                                                                                                 aTAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTAtcgttcgtc                                                                                                                                 <  1:693876/238‑2 (MQ=255)
                                                                                                                     aaaCAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTtat                                                                                                                                                                                       >  1:119799/1‑180 (MQ=255)
                                                                                                                                 cTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAAt                                                                                                    <  1:857617/251‑1 (MQ=255)
                                                                                                                                      gTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTg                                                                                                                                                                                                                             <  1:65529/125‑1 (MQ=255)
                                                                                                                                      gTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTg                                                                                                                                                                                                                             <  1:540291/125‑1 (MQ=255)
                                                                                                                                      gTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATaatag                                                                                               >  1:541107/1‑248 (MQ=255)
                                                                                                                                       ttAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATaatag                                                                                               <  1:840787/250‑4 (MQ=255)
                                                                                                                                               agCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAggcc                                                                                       <  1:174502/250‑4 (MQ=255)
                                                                                                                                               agCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAggc                                                                                        <  1:243533/249‑3 (MQ=255)
                                                                                                                                               agCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAggc                                                                                        <  1:322817/249‑3 (MQ=255)
                                                                                                                                                gCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCAtt                                                                                                                                           >  1:96380/1‑197 (MQ=255)
                                                                                                                                                gCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTAc                                                                                                                     >  1:354216/1‑219 (MQ=255)
                                                                                                                                                   tAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCCCACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGgtg                                                                                                         <  1:401110/228‑1 (MQ=255)
                                                                                                                                                   tAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATa                                                                                                   <  1:653149/234‑1 (MQ=255)
                                                                                                                                                        gAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCAcatcat                                                                                                                                                                     <  1:290089/163‑1 (MQ=255)
                                                                                                                                                        gAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATAc                                                                                                                                                                   >  1:339107/1‑165 (MQ=255)
                                                                                                                                                        gAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTAtcg                                                                                                                                       >  1:765841/1‑193 (MQ=255)
                                                                                                                                                        gAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCAt                                                                               >  1:266693/1‑249 (MQ=255)
                                                                                                                                                             aGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTaa                                                                                                                          >  1:261361/1‑201 (MQ=255)
                                                                                                                                                             aGACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAAttt                                                                                                                       >  1:247505/1‑204 (MQ=255)
                                                                                                                                                              gACACGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGt                                                                       >  1:839389/1‑251 (MQ=255)
                                                                                                                                                                cacGAATCGTGGTGCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATa                                                                                                   >  1:180281/1‑221 (MQ=255)
                                                                                                                                                                            tgCATTTGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCt                                                          <  1:187489/250‑1 (MQ=255)
                                                                                                                                                                                 gctatggcaaaaccaccttaatttCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGc                                                       <  1:637580/226‑1 (MQ=255)
                                                                                                                                                                                  tGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGaa                                                                                                                                                                                                                     >  1:732915/1‑89 (MQ=255)
                                                                                                                                                                                  tGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATAc                                                                                                                                                                   <  1:20517/139‑1 (MQ=255)
                                                                                                                                                                                  tGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATAc                                                                                                                                                                   <  1:644760/139‑1 (MQ=255)
                                                                                                                                                                                  tGATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATaatag                                                                                               >  1:612330/1‑204 (MQ=255)
                                                                                                                                                                                   gATACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTtat                                                                                                                                                                                       <  1:243517/118‑1 (MQ=255)
                                                                                                                                                                                    aTACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCAcatcat                                                                                                                                                                     >  1:119488/1‑135 (MQ=255)
                                                                                                                                                                                    aTACAGGTGTCTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGtt                                                 >  1:221448/1‑251 (MQ=255)
                                                                                                                                                                                             tctCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGgtg                                                                                                         <  1:597436/184‑1 (MQ=255)
                                                                                                                                                                                                cAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATaatag                                                                                               <  1:382104/193‑4 (MQ=255)
                                                                                                                                                                                                cAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCa                                      >  1:111049/1‑250 (MQ=255)
                                                                                                                                                                                                cAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCa                                      >  1:550636/1‑250 (MQ=255)
                                                                                                                                                                                                 aattaattCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCAcc                                    <  1:844384/251‑1 (MQ=255)
                                                                                                                                                                                                  attaattCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCAc                                     >  1:768445/1‑249 (MQ=255)
                                                                                                                                                                                                   ttaattCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCtt                                  <  1:361004/251‑1 (MQ=255)
                                                                                                                                                                                                               gcgcGGGCAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGc                                                                                                                                                       >  1:124657/1‑122 (MQ=255)
                                                                                                                                                                                                                      cAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACaatga                   <  1:540651/247‑3 (MQ=255)
                                                                                                                                                                                                                      cAGAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGc                <  1:470762/250‑1 (MQ=255)
                                                                                                                                                                                                                        gAAATTCATTTTCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAAtt                                                                                                                        >  1:92343/1‑144 (MQ=255)
                                                                                                                                                                                                                                   tCATCTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAGCAtttttt  <  1:156740/251‑1 (MQ=255)
                                                                                                                                                                                                                                       cTTTTTCTCTAATCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTCCCTTTAATTTACTTGTAATTGGTGTAAATAATAGTAAAGGCCTTTTTCATCTTTCAGTAATTCTTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATGATGCGATCAg          >  1:426634/1‑239 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                          
CTTTCACAAAAATATGTTTAACCAATGAATTTTCAATCGGTTTAATTTCTTTGCTTCTCCCGCTTAGTGCAAATTTTCCTGAAGCCGTTGCGATAATTTCCACATTGCTAAAGATAGAAACAATAATCGCTAAAGTTAAAAAGAGCATAATGGAATAAGACACGAATCGTGGTGCATTTGATACAGGTGTTTCAATTAATTCCAAATGCGCGGGCAGAAATTCATTTTCATCTTTTTCTCTAACCGGAGAATCAAGCTGTTTACGAATTTTCCAAGTTTCATTCCACACGTTTTTATAACGGGAAAGCACATCATACAATGCCAAAAGCCAAGTTTTCATTATCGTTCGTTCCTTTAATTTACTTGTAATTGGTGTAAATAAGAGTAAAGACCTTTTTCATCTTTCAGTAATTCCTGATGCTTGCCTTGTTCGATGATTTCACCTTTGTCCATCACAATAATGCGATCAGCATTTTTT  >  1/1818478‑1818955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑