Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,817,263	G→A	intergenic (+35363/+18121)	unknown → / ← unknown	tRNA‑Asp‑GTC/tRNA‑Lys‑CTT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,817,263	0	G	A	100.0%	35.0 / NA	14	intergenic (+35363/+18121)	unknown/unknown	tRNA‑Asp‑GTC/tRNA‑Lys‑CTT
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (5/9);  total (5/9)

GTCAACGGCAACGACGGCTTGCAACCTGTGCTGATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCT‑AAAGCATTTTCTGATGCT‑AAAAAAGACCTGAAACCGATTCAGGTCTTTTGTTTTTCGG‑TGATTAGAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCGAAAACCTACAACGGGCTTTCCACTTGCAGGCGTTCGCAAATGCCGGTAATGCGCTTTCAATTATAAATCCATCATCAAGTCACAGTTTTATACTGCCTAACCAAATCTATTTTCAATTTAGACTTTTGATACATTGTGGAAAACCGGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTAAGTAGATAGCTTATAACGCTTCTCATGCCTGTCTTAATTT  >  1/1817016‑1817469                                                                                                                                                                                                                                                            |                                                                                                                                                                                                               gTCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggg                                                                                                                                                                                                              >  1:612072/1‑249 (MQ=255)  tCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtg                                                                                                                                                                                                             <  1:891276/251‑4 (MQ=255)  tCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtg                                                                                                                                                                                                             <  1:861517/251‑4 (MQ=255)  tCAACGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATgg                                                                                                                                                                                                               <  1:778134/249‑2 (MQ=255)     aCGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgaga                                                                                                                                                                                                          <  1:603299/251‑7 (MQ=255)      cGGCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaa                                                                                                                                                                                                         <  1:620902/251‑8 (MQ=255)      cGGCAACGACGGTTTGCAACATGTGCTTATCGCGTTGGCGAGAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCAGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACTCTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaa                                                                                                                                                                                                         <  1:452723/251‑8 (MQ=255)       ggCAACGACGGTTTGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaat                                                                                                                                                                                                        >  1:165049/1‑243 (MQ=255)                 gtttGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggag                                                                                                                                                                                              >  1:52282/3‑233 (MQ=255)                 gtttGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCCACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggag                                                                                                                                                                                              >  1:55082/3‑233 (MQ=255)                  tttGCAACCTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggag                                                                                                                                                                                              <  1:375722/249‑19 (MQ=255)                         ccTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggagcggataa                                                                                                                                                                                       >  1:799382/1‑225 (MQ=255)                         ccTGTGCTTATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCTAAAAGCA‑TTTCCGATGATAAAAAAAGACCTGAAGCGAATTCAGGTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATggtgagaatgaggctggagcggataa                                                                                                                                                                                       >  1:332391/1‑225 (MQ=255)                                                                                                                                             ggTCTTTTGTTTTTCGGCGGGTTAAAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCG‑AAACCTACAACGGGCTTTCGGTTTGCAGGCGTTCGCAAATGTCGGTAATgg                                                                                                                                                                                                               >  1:132008/1‑110 (MQ=255)                                                                                                                                                                          caccggggaaatccaCCGCACTTTTGCACCAGAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGt                                       <  1:429082/237‑1 (MQ=255)                                                                                                                                                                               gggaaatccaCCGCACTTTTGCACCAGAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGAt                                                                                                                                 >  1:572457/10‑156 (MQ=255)                                                                                                                                                                               gggaaatccaCCGCACTTTTGCACCAGAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTtat                                                                                          >  1:699651/10‑195 (MQ=255)                                                                                                                                                                                 gaaatccaCCGCACTTTTGCACCAGAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAg                                 >  1:884751/8‑250 (MQ=255)                                                                                                                                                                                  aaatccaCCGCACTTTTGCACCAGAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGc                                <  1:207804/244‑1 (MQ=255)                                                                                                                                                                                        aCCGCACTTTTGCACCAGAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGCTTATAAc                         <  1:296055/251‑1 (MQ=255)                                                                                                                                                                                        aCCGCACTTTTGCACCAGAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGCTTATAAc                         <  1:443109/251‑1 (MQ=255)                                                                                                                                                                                              cTTTTGCACCAGAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTc                                                                                                    <  1:845446/170‑1 (MQ=255)                                                                                                                                                                                                    caccagAAAA‑CTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGCTTATAACACTTCTCATGcc             <  1:873801/246‑1 (MQ=255)                                                                                                                                                                                                               cTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGCTTATAACACTTCTCATGCCTGTCTTAAtt   <  1:295554/251‑1 (MQ=255)                                                                                                                                                                                                               cTACAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGCTTATAACACTTCTCATGCCTGTCTTAAtt   <  1:214057/251‑1 (MQ=255)                                                                                                                                                                                                                 aCAACGGGCTTTCGGCTTGCTGGTATTCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGCTTATAACACTTCTCATGCCTGTCTTAAttt  >  1:881110/1‑250 (MQ=255)                                                                                                                                                                                                                              ggcttgctggtattCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGCTTATAAc                         <  1:751097/202‑1 (MQ=255)                                                                                                                                                                                                                              ggcttgctggtattCGCAAATGCAGGTAATACGATTTCAATTATAAATCCATCATCAAGTTACCGTTTTATACTGTCTAACCAAATCCATTTTCAATTTAGACTTTTGATACATTGCGGAAAATCAGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTGAGTAGATAGCTTATAACACTTCTCATGcc             >  1:338020/13‑226 (MQ=255)                                                                                                                                                                                                                                                            |                                                                                                                                                                                                               GTCAACGGCAACGACGGCTTGCAACCTGTGCTGATCGCGTTGGCGGCAAAACGTTCTCTTGATGAAGGACGCCCGGTGAAACTGGCGGAAATCGCCT‑AAAGCATTTTCTGATGCT‑AAAAAAGACCTGAAACCGATTCAGGTCTTTTGTTTTTCGG‑TGATTAGAAAACACTTGAATTTTTGACCGCACTTTTGC‑CCCGAAAACCTACAACGGGCTTTCCACTTGCAGGCGTTCGCAAATGCCGGTAATGCGCTTTCAATTATAAATCCATCATCAAGTCACAGTTTTATACTGCCTAACCAAATCTATTTTCAATTTAGACTTTTGATACATTGTGGAAAACCGGAATGTTATATTCTATCTTTTATAATTAACGTTCTCTTAAACTTTTATCAATAGATTCTTCTAATGGGCTAAGTAGATAGCTTATAACGCTTCTCATGCCTGTCTTAATTT  >  1/1817016‑1817469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑