Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,792,848 C→T intergenic (+10948/+42536) unknown → / ← unknown tRNA‑Asp‑GTC/tRNA‑Lys‑CTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,792,8480CT100.0% 240.0 / NA 79intergenic (+10948/+42536)unknown/unknowntRNA‑Asp‑GTC/tRNA‑Lys‑CTT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (33/46);  total (33/46)

TACTTGCAAATTGAAATGGATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGCCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTACTTTCAAATTTTTCAATAGAATAAGAC  >  1/1792615‑1793090
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                  
tACTTGCAAATTGAAATGGATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGttt                                                                                                                                                                                                                                   <  1:44979/251‑1 (MQ=255)
           tGAAATGGATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGccc                                                                                                                                                                                                                        <  1:616211/251‑1 (MQ=255)
            gAAATGGATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGcc                                                                                                                                                                                                                         >  1:71215/1‑249 (MQ=255)
            gAAATGGATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATAATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGcc                                                                                                                                                                                                                         >  1:192520/1‑249 (MQ=255)
                 ggATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCGTAGTTTCTCGTTGGCCCTCTTaa                                                                                                                                                                                                                  >  1:723813/1‑251 (MQ=255)
                 ggATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTaa                                                                                                                                                                                                                  >  1:267643/1‑251 (MQ=255)
                  gATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAAt                                                                                                                                                                                                                 >  1:487079/1‑251 (MQ=255)
                    tttAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAg                                                                                                                                                                                                               <  1:855549/251‑1 (MQ=255)
                     ttAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAgg                                                                                                                                                                                                              <  1:573761/251‑1 (MQ=255)
                                      gATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAgg                                                                                                                                                                                                              >  1:515492/1‑234 (MQ=255)
                                       aTTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATa                                                                                                                                                                                            >  1:886665/1‑251 (MQ=255)
                                        ttCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATa                                                                                                                                                                                            >  1:722078/1‑250 (MQ=255)
                                        ttCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATAc                                                                                                                                                                                           <  1:614190/251‑1 (MQ=255)
                                         tCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATAct                                                                                                                                                                                          <  1:773413/251‑1 (MQ=255)
                                                   gtggGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCCATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCt                                                                                                                                                                                 <  1:433877/250‑1 (MQ=255)
                                                             cccTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCggg                                                                                                                                                                                                 >  1:666834/1‑224 (MQ=255)
                                                               cTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAgg                                                                                                                                                                                                              <  1:724246/209‑1 (MQ=255)
                                                                 cAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAg                                                                                                                                                                                                               >  1:164224/1‑206 (MQ=255)
                                                                 cAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCt                                                                                                                                                                                 <  1:216787/236‑1 (MQ=255)
                                                                    tGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTc                                                                                                                                                                               >  1:811532/1‑235 (MQ=255)
                                                                    tGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTg                                                                                                                                                               >  1:32328/1‑251 (MQ=255)
                                                                      aCAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGa                                                                                                                                                                                                >  1:121539/1‑216 (MQ=255)
                                                                      aCAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCa                                                                                                                                                             >  1:346816/1‑251 (MQ=255)
                                                                         gTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTc                                                                                                                                                                                                    >  1:662147/1‑209 (MQ=255)
                                                                            tCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGAc                                                                                                                                                       <  1:325016/251‑1 (MQ=255)
                                                                              gTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGAc                                                                                                                                                       <  1:289721/249‑1 (MQ=255)
                                                                                   aTTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTc                                                                                                                                                <  1:311957/251‑1 (MQ=255)
                                                                                   aTTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTc                                                                                                                                                <  1:1345/251‑1 (MQ=255)
                                                                                    ttCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCt                                                                                                                                               <  1:503056/251‑1 (MQ=255)
                                                                                        aTCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGAc                                                                                                                                           <  1:74478/251‑1 (MQ=255)
                                                                                                cGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATa                                                                                                                                                                                                                >  1:579571/1‑174 (MQ=255)
                                                                                                cGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAac                                                                                                                                    <  1:677437/250‑1 (MQ=255)
                                                                                                    agaACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACAt                                                                                                                                <  1:634163/250‑1 (MQ=255)
                                                                                                                aaaTCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACtcttc                                                                                                                                                                                      >  1:582504/1‑184 (MQ=255)
                                                                                                                  aTCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAgg                                                                                                                                                                                                              >  1:780290/1‑158 (MQ=255)
                                                                                                                         ggATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACaaa                                                                                                          >  1:898284/1‑251 (MQ=255)
                                                                                                                          gATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAgg                                                                                                                                                                                                              <  1:629052/150‑1 (MQ=255)
                                                                                                                               cTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGAt                                                                                                                                                                                                      >  1:125342/1‑153 (MQ=255)
                                                                                                                               cTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAgg                                                                                                                                                  <  1:260688/205‑1 (MQ=255)
                                                                                                                                 tCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGatat                                                                                                  <  1:298154/251‑1 (MQ=255)
                                                                                                                                   tATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCgg                                                                                                                                                                                                        >  1:803787/1‑147 (MQ=255)
                                                                                                                                      cGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATtgatg                                                                                             <  1:257935/251‑1 (MQ=255)
                                                                                                                                         cATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGc                                                                                          <  1:827292/251‑1 (MQ=255)
                                                                                                                                           ttattaACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGAc                                                                                                                                           <  1:718794/200‑1 (MQ=255)
                                                                                                                                            tattaACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGAATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATtgatg                                                                                             >  1:60052/1‑245 (MQ=255)
                                                                                                                                             attaACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGcc                                                                                      <  1:792318/251‑1 (MQ=255)
                                                                                                                                                 aCATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAg                                                                                  <  1:377536/251‑1 (MQ=255)
                                                                                                                                                   aattCAATAACACAAACCCTCTCCCGAACTAATAAGACCTCAGTGACGACGGTAAATGTGGTGATCGCCCTTTTTGGCTTCGGCGGTCCGACAATCCAAAAGTTCCCGGTGGCCCTCCTAATAGGGATCCGATTCCGGACAAACTCTTCTATCCTCGGTGCGATTGCTAATGCAAATGGCTTAAGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTc                                                                                <  1:518369/249‑1 (MQ=255)
                                                                                                                                                             cacaAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTAt                                                                                                                                                                                   <  1:583289/142‑1 (MQ=255)
                                                                                                                                                                aaaCTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTg                                                                   <  1:609561/251‑1 (MQ=255)
                                                                                                                                                                 aaCTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACaa                                                                                                           >  1:639396/1‑210 (MQ=255)
                                                                                                                                                                  aCTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGc                                                                                                                           >  1:226307/1‑193 (MQ=255)
                                                                                                                                                                       ctcCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCt                                                                                     <  1:8825/226‑1 (MQ=255)
                                                                                                                                                                             aaCTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTc                                                       <  1:243050/250‑1 (MQ=255)
                                                                                                                                                                               cTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAAcaca                                                                                                                                 <  1:820055/174‑1 (MQ=255)
                                                                                                                                                                               cTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAAccc                                                                                                                      <  1:557594/185‑1 (MQ=255)
                                                                                                                                                                               cTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAga                                                                                                        <  1:331419/199‑1 (MQ=255)
                                                                                                                                                                                 attatGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAgg                                                                                                                                                                                                              <  1:568696/95‑1 (MQ=255)
                                                                                                                                                                                 attatGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAg                                                                                                                                                                                                               <  1:819017/94‑1 (MQ=255)
                                                                                                                                                                                 attatGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATg                                                                                                                               <  1:892398/174‑1 (MQ=255)
                                                                                                                                                                                 attatGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAAccc                                                                                                                      <  1:507639/183‑1 (MQ=255)
                                                                                                                                                                                 attatGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGatat                                                                                                  >  1:844886/1‑203 (MQ=255)
                                                                                                                                                                                 attatGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATtgatg                                                                                             >  1:619549/1‑208 (MQ=255)
                                                                                                                                                                                 attatGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGc                                                                                          <  1:125471/211‑1 (MQ=255)
                                                                                                                                                                                 attatGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTc                                                                                >  1:203267/1‑221 (MQ=255)
                                                                                                                                                                                     tGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGTACACATGGTGCAAccc                                                                                                                      >  1:811234/1‑179 (MQ=255)
                                                                                                                                                                                        cTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATtgatg                                                                                             <  1:179165/201‑1 (MQ=255)
                                                                                                                                                                                              tGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGAc                                        <  1:871314/248‑1 (MQ=255)
                                                                                                                                                                                               gacgacGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAg                                                   >  1:496072/1‑236 (MQ=255)
                                                                                                                                                                                                      ttAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACttttt                              <  1:687829/250‑1 (MQ=255)
                                                                                                                                                                                                       tAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCat                                                                                                                                                            >  1:893557/1‑123 (MQ=255)
                                                                                                                                                                                                       tAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTa                             >  1:566309/1‑250 (MQ=255)
                                                                                                                                                                                                       tAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTa                             >  1:826906/1‑250 (MQ=255)
                                                                                                                                                                                                        aaTTGTGGTGATCGCCCTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTTGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTACt                           <  1:441060/251‑1 (MQ=255)
                                                                                                                                                                                                                       ccTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTACTTTCAAATTTTTCAAt            <  1:871453/251‑1 (MQ=255)
                                                                                                                                                                                                                        cTTTTTGTCTTCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTACTTTCAAATTTTTCAATa           >  1:720162/1‑251 (MQ=255)
                                                                                                                                                                                                                                 ttCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTACTTTCAAATTTTTCAATAGAATAAGAc  <  1:767647/251‑1 (MQ=255)
                                                                                                                                                                                                                                 ttCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTACTTTCAAATTTTTCAATAGAATAAGAc  <  1:659944/251‑1 (MQ=255)
                                                                                                                                                                                                                                 ttCGGCGGTCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTACTTTCAAATTTTTCAATAGAATAAGAc  <  1:359982/251‑1 (MQ=255)
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                  
TACTTGCAAATTGAAATGGATTTAACCTTTATCGCAGCGATTCTTTCCGTGGTGGGCTATTCCCTCAATGACAGTATCGTGGTATTCGATCGTGTGCGTGAGAACTTCCGTAAAATCAGACGGATTGCTTCTATCGACATTATTAACATTTCATTAACACAAACTCTCTCCCGAACTATTATGACTTCAGTGACGACGTTAATTGTGGTGATCGCCCTTTTTGTCTTCGGCGGCCCGACAATCCATAGTTTCTCGTTGGCCCTCTTAATAGGTATCGGATTCGGGACATACTCTTCTATCTTCGTTGCGATTGCTATTGCATATGACTTAGGTCTTGACCGTGAACACATGGTGCAACCCAAAGTGAACAAAGATGATATTGATGAGCTGCCTTAGTCAATAACAAAAGTGCGGTTAAAATTCATAGTGAATTTCGACCGCACTTTTTACTTTCAAATTTTTCAATAGAATAAGAC  >  1/1792615‑1793090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑