| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,761,540 | G→A | intergenic (+119182/‑20185) | unknown → / → unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,761,540 | 0 | G | A | 97.1% | 179.7 / NA | 71 | intergenic (+119182/‑20185) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (42/26); total (42/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AATTCAGGGTTTTCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACAAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCGGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGTAAGAGGGCGGGTTATTCAGTGAAAGTGTAGCAA > 1/1761312‑1761762 | aaTTCAGGGTTTTCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCa < 1:467385/250‑1 (MQ=255) aTTCAGGGTTTTCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATg > 1:895330/1‑251 (MQ=255) aTTCAGGGTTTTCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATg > 1:610866/1‑251 (MQ=255) aTTCAGGGTTTTCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCACAATCACGATCTCTTCCGGCGG‑TTCTGCCCTGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATg > 1:332964/1‑251 (MQ=255) gTTTTCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTcagc > 1:350640/1‑250 (MQ=255) tttCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTcagccag < 1:758360/251‑1 (MQ=255) tttCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTcagccag < 1:320677/251‑1 (MQ=255) cGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGt < 1:291139/251‑1 (MQ=255) cAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGaa < 1:609097/250‑1 (MQ=255) aGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCa > 1:864160/1‑251 (MQ=255) gCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTcagcc > 1:672908/1‑235 (MQ=255) gCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCAt > 1:61000/1‑251 (MQ=255) cccATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCCTGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATaa > 1:265389/1‑251 (MQ=255) ccATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATaaa > 1:161939/1‑251 (MQ=255) ttattCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATaaaaaa > 1:626222/1‑251 (MQ=255) ttattCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATaaaaaa < 1:850604/251‑1 (MQ=255) cATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGaa < 1:477000/222‑1 (MQ=255) aaaCATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAgg > 1:700157/1‑180 (MQ=255) aaCATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAAt < 1:585785/251‑1 (MQ=255) aaCATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAAt > 1:567679/1‑251 (MQ=255) aCATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATa > 1:599715/1‑251 (MQ=255) cATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATaa < 1:196273/251‑1 (MQ=255) atCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAg > 1:467200/1‑250 (MQ=255) atCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGc < 1:495762/251‑1 (MQ=255) atCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TACTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGc < 1:488230/251‑1 (MQ=255) tCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGc > 1:339230/1‑250 (MQ=255) ccTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGccc < 1:165857/251‑1 (MQ=255) aGCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAAt > 1:215187/1‑250 (MQ=255) gCCGGAAATATTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATca > 1:164166/1‑251 (MQ=255) atgtgtaaaagagccagccGCAGGATTGACTAATCCCGTAAGCTGCTCCCCCGCTTCCTGCCCCGGATTTTCCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTCCCTCTCTTTCAGTTTCGTCGTTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCACCCAGCGGTAGAATTTCATTAATAGACAAAAAAAAAA‑CGCGCCCGAACAGAAAAAAAACCCCACCGCCACAGAAATCACAg < 1:132433/234‑1 (MQ=255) cagtatTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACaa > 1:626557/4‑240 (MQ=255) atatTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATaaaaaa < 1:215778/203‑1 (MQ=255) atatTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAg > 1:413064/1‑251 (MQ=255) tatTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTcagccag > 1:160196/1‑170 (MQ=255) tatTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGt > 1:46537/1‑251 (MQ=255) tatTAATGCGATCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGt > 1:495189/1‑251 (MQ=255) aTGCGACCCGCGGAATTGACTATTTCCGTAAGCTCCCCCCCCGTTTCCGGCGCCGGATTTTCCCCAACCCCGATCTC‑TCCGGGGGTTTCTGCCTTGTGTGTTCCCTCTTTTTCATTTTCGTGGTTTTTTT‑CCGGTTTTT‑AAGGGGTTTTTT‑GAATGGCCAGCCAGGGGTAAAATTTCATAAATAGACAAAAAAAAAC‑CGCCCCAGAAAAAAAAAAAAACCCCACCGCCACAAAAATCACAGCCAGTAAGGa < 1:385443/251‑1 (MQ=255) cGATCCGCAGGATTGTCTATTCCCGCAGGCTGCTCCCCCTCTCCCTGCGCGGGATTTTCCCCATTCCCGTTCTCTTCGGGCGT‑TTTTGCAGTGTGCTTTTCCTCTTTTTCATTTTCGTCGTTTTTTT‑CCAGTTCTT‑CGGGCGGATTTT‑GCATGGTTAGCCAGGGGTAAATTTTAATAAAAAGACGAAAAAAAAA‑CGCGCCCAAAAAAAAAATAAGGCCCACCGCCACAAAAATCACAGCCAGTAAGGATa < 1:212200/250‑1 (MQ=255) aTCCGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGa > 1:183907/1‑246 (MQ=255) ccGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGc < 1:253379/220‑1 (MQ=255) ccGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGcc > 1:551943/1‑250 (MQ=255) ccGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCg > 1:691903/1‑251 (MQ=255) ccGCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCg > 1:345686/1‑251 (MQ=255) gCAGGATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGaa > 1:229813/1‑251 (MQ=255) ggATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAAttt > 1:797776/1‑251 (MQ=255) ggATTGACTAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAAttt > 1:393817/1‑251 (MQ=255) gactaaTTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTa > 1:448656/5‑251 (MQ=255) tCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGa > 1:144353/1‑227 (MQ=255) ctAAGCTCCTCCCCCTCTCCCTGCGCCGGATTTTCCCCAATCCCGTTCTCTCCCGGCTT‑TTCTGCCTTGTGCTTTTCCTCTTTTTCATTTTCTTCTTTTTTTC‑CCAGTTCTT‑CGGGCGGTTTTT‑GCATGGTCACCCGGCGGTAGAATTTAATAAATAGACAAAAAAAAAC‑CCCGCCCAAACAAAAAAAAAACCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGta < 1:610637/250‑1 (MQ=255) aaGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGtata > 1:362862/1‑251 (MQ=255) ctgccccccccctcccTGCGCCGGTTTTTTCCCAATCACGATCTC‑TCCGGGGGTTTCTCCCATGTGCGTTTCCTCTCTTTCTGTTTCGTCGTTTTTTC‑CCAGGTCTT‑CAGGGGGTTTTT‑GCATGGCCAGCCAGCGGTAAAATTCAATAAAAAGAAAAAAAAAAAA‑CGCCCCAAAAAAAAAAAAAAACCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAAt < 1:379995/237‑1 (MQ=255) cccccctccctgcgcgggttttttCCCAATCACTATCTCTCCCGGCGT‑TTCTCCCTTGTGCTTTCCCTCTCTTTCATTTTCGTCGTTTTTTC‑CCAGTTCTT‑CGGGGGGTTTTT‑GCAGGGCCACCCAGGGGTAAAATTTAATAAAAAGACAAAAAAAAAC‑CGCGCCCAAAAAAAAAAAAAACCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAggg < 1:756873/231‑1 (MQ=255) cccGCTCCCGGCGCGGGAGTTTCCCCAACCACGATCTCTCCGGGCGG‑TTCTGCAATGTGCGTTTCCTCTCTTTCATTTTCTTGGTTTTTTT‑CCGGGTCTG‑CAGGTGGATTTT‑GCAGGGACAGCCGGCGGAAAAATTTCATAAATAGA‑GAAAAAAAAACCGCGCCCGAAAAAAAAAAAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGt < 1:298373/250‑1 (MQ=255) aCCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGt > 1:139215/1‑251 (MQ=255) cTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAg < 1:190897/142‑1 (MQ=255) ccGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCG‑CACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGccc < 1:20115/250‑1 (MQ=255) tCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGCAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGAATAAATTTAGGGTTAAACTACCGCCCAGCACGcc > 1:849843/1‑250 (MQ=255) ccAATCACGTTCTTTTCGGGCGT‑TTCTGCCTTGTGCTTTTCCTCTTTTTCAGTTTCGTCTGTTTTTT‑CCAGGTCTA‑GAGGCGGTTTTG‑GCATGGCCAGCCAGCGGAAAAATTTCATAAAAAGAAAAAAAAAAAC‑CGCGCCAAAAAAAAAAAAAACCCCCCCCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTcc < 1:22963/251‑1 (MQ=255) gATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGt > 1:855241/1‑251 (MQ=255) ctctTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGcc > 1:372414/1‑169 (MQ=255) ctTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATaaaa < 1:726301/119‑1 (MQ=255) ctTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGTAagag > 1:757398/1‑251 (MQ=255) cccGGCGT‑TTCTGCCTTGTGCTTTCCCTCCTTTTCTTTTTCGT‑GGTTTTTT‑CCCGGTTTTCCAGGGGGATTTT‑GCAGGGCCAGCCAGGGGTAAAATTTCATAAAAAAAAAAAAAAAAAC‑CGCGCCAAAAAAAAAAATAACCCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGTAAGAggg < 1:366745/250‑1 (MQ=255) g‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGTAAGAGGGCGGGTTa > 1:484874/1‑251 (MQ=255) ctgccttgtgtttttCCTCTCTTTCTGTTTCGT‑GGTTTTTTCCCAGGTCTT‑CAGG‑GGTTTTTGGCAGGGCCAGCCAGGGGAAAATTTTCATAAAAAGACAAAAAAAAAG‑CGCCCCCAAAAAAAAAAAAAACCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGTAAGAGGGCGGGTTATTc < 1:575736/239‑1 (MQ=255) gCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATa > 1:83532/1‑163 (MQ=255) gCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACt > 1:502799/1‑182 (MQ=255) gCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGTAAGAGGGCGGGTTATTCAg > 1:844063/1‑251 (MQ=255) gtgCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGAc < 1:661257/92‑1 (MQ=255) ctctctttaggTTTCGTTGTTTTTTT‑CCAGGTCTG‑CAGGCGGTTTTT‑GCAGGGCCAGCCGGCGGTAAAATTTCATAAAAAGACAAAAAAAAAC‑CGCGCCAAAAAAAAAAAAAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGTAAGAGGGCGGGTTATTCAGTGAAAGTGTagcaa < 1:332027/241‑1 (MQ=255) cTTTCAGTTTCGTCGGTTTTTT‑CCAGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTT‑AACTACCGCCCAGCACGCCTCCCGCAAGGTAAGAGGGCGGGTTATTCAGTGAAAGTGTagca > 1:540682/1‑245 (MQ=255) | AATTCAGGGTTTTCCGGTGCAAAAGCATTGACCTCGTTCCCATTATTCATCGGCACATAAAACATATCCTGCGCTTTTGATAAGCCGGAAATATTAATGCGATCCGCAGGATTGACAAATTCCGTAAGCTGCTCCACCGCTTCCTGCGCCGGAGTTTTCCCAATCACGATCTCTTCCGGCGG‑TTCTGCCATGTGCGTTTCCTCACTTTCAGTTTCGTCGGTTTTTT‑CCGGGTCTT‑CAGGCGGATTTT‑GCATGGTCAGCCAGCGGTAGAATTTCATTAATAGACGAATAAAAAA‑CGCGCCCGAACAGAAAATAAAGCCCACCGCCACAAAAATCACAGCCAGTAAGGATACGCCGAATTTGCCTAAACTCGGGTATAAATTCAGGGTTAAACTACCGCCCAGCACGCCTCCCGCAAGGTAAGAGGGCGGGTTATTCAGTGAAAGTGTAGCAA > 1/1761312‑1761762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |