Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,741,833 C→T intergenic (+99475/‑39892) unknown → / → unknown tRNA‑Leu‑CAA/tRNA‑Asp‑GTC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,741,8330CT100.0% 227.5 / NA 76intergenic (+99475/‑39892)unknown/unknowntRNA‑Leu‑CAA/tRNA‑Asp‑GTC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (47/29);  total (47/29)

GTTTTCGGCCAGGCTGCTTTTTCACGATCAATTTCAATTTGATCATCATCGTTCAAATGCGGTTCTTTATCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCATCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCCAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTAATACAAGTGCGGTCAGATAGCTTTTTGTTTTCATAAATT  >  1/1741591‑1742077
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                    
gttttcggCCAGGCTGCTTTTTCACGATCAATTTCAATTTGATCATCATCGTTCAAATGCGGTTCTTTATCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCtt                                                                                                                                                                                                                                               <  1:301997/250‑1 (MQ=255)
                    ttCACGATCAATTTCAATTTGATCATCATCGTTCAAATGCGGTTCTTTATCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAAt                                                                                                                                                                                                                            >  1:54663/1‑249 (MQ=255)
                                 tcaatttGATCATCATCGTTCAAATGCGGTTCTTTATCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAgg                                                                                                                                                                                                                                          >  1:558406/1‑222 (MQ=255)
                                                tcGTTCAAATGCGGTTCTTTATCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGaaa                                                                                                                                                                                              <  1:626670/251‑1 (MQ=255)
                                                        aTGCGGTTCTTTATCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGt                                                                                                                                                                                      <  1:381872/251‑1 (MQ=255)
                                                               tCTTTATCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATgaga                                                                                                                                                                               >  1:514995/1‑251 (MQ=255)
                                                                    aTCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGt                                                                                                                                                                                                                                         >  1:203461/1‑188 (MQ=255)
                                                                    aTCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGt                                                                                                                                                                                      >  1:344101/1‑239 (MQ=255)
                                                                    aTCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAg                                                                                                                                                                          <  1:348527/251‑1 (MQ=255)
                                                                             aGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCggg                                                                                                                                                                 >  1:286462/1‑251 (MQ=255)
                                                                                cAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTaa                                                                                                                                                                                                                                       >  1:281069/1‑178 (MQ=255)
                                                                                        aacgataacgTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATc                                                                                                                                                                                            >  1:65686/1‑213 (MQ=255)
                                                                                         acgataacgTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGtt                                                                                                                                                     >  1:479284/1‑251 (MQ=255)
                                                                                                    cATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCaaa                                                                                                                                           >  1:304305/1‑250 (MQ=255)
                                                                                                                        aaCTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGaaa                                                                                                                                                                                              <  1:868459/179‑1 (MQ=255)
                                                                                                                        aaCTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGt                                                                                                                                                                                      <  1:202424/187‑1 (MQ=255)
                                                                                                                        aaCTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAAc                                                                                                                                          >  1:660738/1‑231 (MQ=255)
                                                                                                                        aaCTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACgg                                                                                                                         >  1:750680/1‑248 (MQ=255)
                                                                                                                        aaCTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTACCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAAGCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGAc                                                                                                                                                                              <  1:325397/195‑1 (MQ=255)
                                                                                                                          cTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGt                                                                                                                                                                         >  1:414534/1‑198 (MQ=255)
                                                                                                                          cTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTa                                                                                                                    >  1:764712/1‑251 (MQ=255)
                                                                                                                            catacataTTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGt                                                                                                                                                                                      <  1:82336/183‑1 (MQ=255)
                                                                                                                            catacataTTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGAt                                                                                                                                 <  1:23615/236‑1 (MQ=255)
                                                                                                                            catacataTTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTaaa                                                                                                                  >  1:143221/1‑251 (MQ=255)
                                                                                                                              tacataTTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATtc                                                                                                                                                                                                             >  1:200648/1‑158 (MQ=255)
                                                                                                                                cataTTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAgaga                                                                                                              >  1:860772/1‑251 (MQ=255)
                                                                                                                                  tatTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATc                                                                                                                                                                                            >  1:373655/1‑171 (MQ=255)
                                                                                                                                  tatTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGAc                                                                                                                                                                              <  1:380383/185‑1 (MQ=255)
                                                                                                                                  tatTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGAc                                                                                                             >  1:796357/1‑250 (MQ=255)
                                                                                                                                  tatTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGAc                                                                                                             >  1:604196/1‑250 (MQ=255)
                                                                                                                                  tatTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGAc                                                                                                             >  1:178796/1‑250 (MQ=255)
                                                                                                                                   atTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATgag                                                                                                                                                                                <  1:689476/182‑1 (MQ=255)
                                                                                                                                   atTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCa                                                                                                           >  1:683754/1‑251 (MQ=255)
                                                                                                                                          gCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCa                                                                                                      >  1:779250/1‑249 (MQ=255)
                                                                                                                                             atatCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTg                                                                                                 >  1:146168/1‑251 (MQ=255)
                                                                                                                                              tatCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGaaa                                                                                                                                                                                              >  1:841003/1‑157 (MQ=255)
                                                                                                                                              tatCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAag                                                                                                                 >  1:163615/1‑234 (MQ=255)
                                                                                                                                               atCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGc                                                                                                                                                                    >  1:345869/1‑182 (MQ=255)
                                                                                                                                               atCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGtt                                                                                               >  1:627393/1‑251 (MQ=255)
                                                                                                                                                 cTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGtttt                                                                                             >  1:407924/1‑251 (MQ=255)
                                                                                                                                                 cTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGtttt                                                                                             >  1:856213/1‑251 (MQ=255)
                                                                                                                                                 cTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGtttt                                                                                             >  1:639420/1‑251 (MQ=255)
                                                                                                                                                     aTTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAAtt                                                                                         <  1:608738/251‑1 (MQ=255)
                                                                                                                                                     aTTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAAtt                                                                                         <  1:63984/251‑1 (MQ=255)
                                                                                                                                                      ttACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAAttt                                                                                        <  1:386248/251‑1 (MQ=255)
                                                                                                                                                         ccTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCgg                                                                                     >  1:142463/1‑251 (MQ=255)
                                                                                                                                                            gCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGt                                                                                                                                                                                                                                         >  1:850422/1‑100 (MQ=255)
                                                                                                                                                            gCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGc                                                                                                                                                                    >  1:763801/1‑169 (MQ=255)
                                                                                                                                                            gCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAag                                                                                                                 <  1:518391/220‑1 (MQ=255)
                                                                                                                                                               ttCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTAc                                                                               <  1:676549/251‑1 (MQ=255)
                                                                                                                                                                 cAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACcg                                                                             <  1:421833/251‑1 (MQ=255)
                                                                                                                                                                        tcatcaATTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCg                                                                       >  1:381441/1‑250 (MQ=255)
                                                                                                                                                                              aTTTTATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGc                                                                                                                                              <  1:321662/173‑1 (MQ=255)
                                                                                                                                                                                tttATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGa                                                              <  1:110234/251‑1 (MQ=255)
                                                                                                                                                                                 ttATTGCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGAc                                                                                                                                                                              <  1:91908/138‑1 (MQ=255)
                                                                                                                                                                                      gCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAat                                                                   >  1:399588/1‑240 (MQ=255)
                                                                                                                                                                                      gCCATATTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTaa                                                        >  1:304602/1‑251 (MQ=255)
                                                                                                                                                                                           atTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATg                                                                                                                                                                                  <  1:579781/124‑1 (MQ=255)
                                                                                                                                                                                           atTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTgg                                                                                                                                               <  1:668712/159‑1 (MQ=255)
                                                                                                                                                                                           atTTAGTGAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCaaa                                                   >  1:648502/1‑251 (MQ=255)
                                                                                                                                                                                                gTGATCATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCttt                                                                                                                                                                                                                        <  1:607661/81‑1 (MQ=255)
                                                                                                                                                                                                  gAACATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAg                                            >  1:113721/1‑251 (MQ=255)
                                                                                                                                                                                                    aCATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGtt                                          >  1:295163/1‑251 (MQ=255)
                                                                                                                                                                                                     cATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCggg                                                                                                                                                                 <  1:87834/131‑1 (MQ=255)
                                                                                                                                                                                                     cATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACa                                                            >  1:149874/1‑232 (MQ=255)
                                                                                                                                                                                                     cATTTCACCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTa                                         >  1:392501/1‑251 (MQ=255)
                                                                                                                                                                                                            ccaATATCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGc                                                                                                                                                                    <  1:221047/120‑1 (MQ=255)
                                                                                                                                                                                                               atatCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTAATAc                                     >  1:420040/1‑245 (MQ=255)
                                                                                                                                                                                                               atatCGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTAATACAAGTg                                >  1:292344/1‑250 (MQ=255)
                                                                                                                                                                                                                   cGGATTGCAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTAATACAAGTGCGGTc                           <  1:26806/251‑1 (MQ=255)
                                                                                                                                                                                                                          cAAAAACGTCGTACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGc                                                                                                                                                                    >  1:204760/1‑107 (MQ=255)
                                                                                                                                                                                                                                  tcgtACGGTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTAATACAAGTGCGGTCAGATAGCTTTTTGt             <  1:331864/250‑1 (MQ=255)
                                                                                                                                                                                                                                         gTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACt                                                                                                                                                                             <  1:696071/83‑1 (MQ=255)
                                                                                                                                                                                                                                         gTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACttt                                                                                                  >  1:305732/1‑158 (MQ=255)
                                                                                                                                                                                                                                         gTTAAAATCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTAATACAAGTGCGGTCAGATAGCTTTTTGTTTTCATaa     >  1:614417/1‑251 (MQ=255)
                                                                                                                                                                                                                                            aaaaTCTAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTAATACAAGTGCGGTCAGATAGCTTTTTGTTTTCATAAAtt  <  1:168181/251‑1 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                    
GTTTTCGGCCAGGCTGCTTTTTCACGATCAATTTCAATTTGATCATCATCGTTCAAATGCGGTTCTTTATCCAGCAAAGACAAGGCATAACGATAACGTTCATAACGGCGTTTCATCATTAACTCATACATATTAAAAGCAATATCTAAATTACCTGCATTCAACTCGTCATCAATTTTATTGCCATATTTAGTGAACATTTCATCAATATCGGATTGCAAAAACGTCGTACGGTTAAAATCCAACGCTTTAAGGTAACGATCAAAAATCTTTTTCGAAAATTCATCATCCAGCTGAAATCTACGGTAATGAGACTGAGTTAGGCGGGTTGTCGCACGTTTCGTGGCAAACATGTTGGATTCCGACGGCTGTAAAGAGACCAGATCACTTTGTTTTAATTTCGGTTGTACCGCGTCCGCAATATTGACATTAAGCAAAAAGGAAGTTAATACAAGTGCGGTCAGATAGCTTTTTGTTTTCATAAATT  >  1/1741591‑1742077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑