Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,636,711 G→T intergenic (+70572/‑5562) unknown → / → unknown tRNA‑Asn‑GTT/tRNA‑Leu‑CAA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,636,7110GT100.0% 59.6 / NA 23intergenic (+70572/‑5562)unknown/unknowntRNA‑Asn‑GTT/tRNA‑Leu‑CAA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (11/12);  total (11/12)

GATTTCCCTTCCTTGACATATCCCAAATTTAACCCCATAAACTTTTTATATATTATAGGACAATTTTCCTGTTTACTTTGGATAATTTCCTTTAAAAACATTTCACGATCATAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAAGTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCATCTCTATTAGATAGATGATAAGACAATACAACTAATAATTTATTAGATATAAAACTTCTCAATAAACTTGAATAATTATTTTTATTATTTAACTCACCATTTTCATAAATGAATTTCAAAATCCTATATAGAAGTAAAAA  >  1/1636473‑1636927
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                        
gATTTCCCTTCCTTGACATATCCCAAATTTAACCCCATAAACTTTTTATATATTATAGGACAATTTTCCTGTTTACTTTGGATAATTTCCTTTAAAAACATTTCACGATCATAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCtat                                                                                                                                                                                                              >  1:230984/1‑251 (MQ=255)
                                          tttttATATATTATAGGACAATTTTCCTGTTTACTTTGGATAATTGCCTTTAAAAACAGTTCACGATCATAGCTATCAATAGCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCATTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTc                                                                                                                                                                    <  1:449089/251‑1 (MQ=255)
                                                 atatTATAGGACAATTTTCCTGTTTACTTTGGATAATTTCCTTTAAAAACATTTCACGATCATAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATaa                                                                                                                                                             >  1:695877/1‑251 (MQ=255)
                                                    ttatAGGACAATTTTCCTGTTTACTTTGGATAATTTCCTTTAAAAACATTTCACGATCATAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAat                                                                                                                                                                          >  1:760587/1‑235 (MQ=255)
                                                         ggACAATTTTCCTGTTTACTTTGGATAATTTCCTTTAAAAACATTTCACGATCATAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTc                                                                                                                                                          >  1:706028/1‑246 (MQ=255)
                                                                                                         cGATCATAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAagag                                                                                                                                                 <  1:179127/207‑1 (MQ=255)
                                                                                                             cATAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTc                                                                                                                                                          <  1:198870/194‑1 (MQ=255)
                                                                                                               tAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCAtct                                                                                                                                           >  1:497814/1‑207 (MQ=255)
                                                                                                                       aaTATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCATCTCTATTAGATAGATGATAAGACAATACAACTAATAATTTATTAGATATAAAAc                                                                                       <  1:107305/251‑1 (MQ=255)
                                                                                                                                  gAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAagag                                                                                                                                                 <  1:674003/182‑1 (MQ=255)
                                                                                                                                     ttaattCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTc                                                                                                                                                                    <  1:470086/160‑1 (MQ=255)
                                                                                                                                                ctctTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAata                                                                                                                                                                         <  1:320204/144‑1 (MQ=255)
                                                                                                                                                ctctTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCATCTCTATtagat                                                                                                                                  <  1:657039/183‑1 (MQ=255)
                                                                                                                                                ctctTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCATCTCTATTAGATAGATGATAAGACAATACAACTAATAATTTATTAGATATAAAACTTCTCAATAAACTTGAATAattatt                                                              >  1:233932/1‑251 (MQ=255)
                                                                                                                                                                       ccTTTCTCCCTTAAAAACTAAATCGTATAACGCTTCTTTCTCTACCCTCCTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCATCTCTATTAGATAGATGATAAGACAATACAACTAATAATTTATTAGATATAAAACTTCTCAATAAACTTGAATAATTATTTTTATTATTTAACTc                                               <  1:319961/242‑1 (MQ=255)
                                                                                                                                                                       aCTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAata                                                                                                                                                                         <  1:677588/121‑1 (MQ=255)
                                                                                                                                                                              cccTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTc                                                                                                                                                                    >  1:351771/1‑119 (MQ=255)
                                                                                                                                                                                               gTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCATCTCTATTAGATAGATGATAAGACAATACAACTAATAATTTATTAg                                                                                                >  1:482047/1‑170 (MQ=255)
                                                                                                                                                                                                tataAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTc                                                                                                                                                          <  1:88858/111‑1 (MQ=255)
                                                                                                                                                                                                           tttctCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAatat                                                                                                                                                               >  1:490459/1‑95 (MQ=255)
                                                                                                                                                                                                            ttctCTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCATCTCTATTAGATAGATGATAAGACAATACAACTAATAATTTATTAGATATAAAACTTCTCAATAAACTTGAATAATTATTTTTATTATTTAACTCACCATTTTCATAAATGAATTTCAAAATCCTATATAGAAGTaaaaa  >  1:620099/1‑251 (MQ=255)
                                                                                                                                                                                                             tctcTACCCTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTa                                                                                                                                                                            <  1:710591/80‑1 (MQ=255)
                                                                                                                                                                                                                     cTACTCACTTGATGTATAAATTCAATTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAatatat                                                                                                                                                                      >  1:783170/1‑78 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                        
GATTTCCCTTCCTTGACATATCCCAAATTTAACCCCATAAACTTTTTATATATTATAGGACAATTTTCCTGTTTACTTTGGATAATTTCCTTTAAAAACATTTCACGATCATAGCTATCAATATCATCAGGAATTAATTCACCACTCTTAAGAGCATCAAATAGATAACTTTCTCCCTTAAAAACTAAATCGTATAAAGCTTCTTTCTCTACCCTACTCACTTGATGTATAAATTCAAGTTCTAGATCTATAAAATTTACGTGCTCCAAAAATGAGAACCTATTAATATATTCAATATAATTCCTATAAGAGTCATCTCTATTAGATAGATGATAAGACAATACAACTAATAATTTATTAGATATAAAACTTCTCAATAAACTTGAATAATTATTTTTATTATTTAACTCACCATTTTCATAAATGAATTTCAAAATCCTATATAGAAGTAAAAA  >  1/1636473‑1636927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑